Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq959 132 4e-26 seq977 118 1e-21 seq978 111 1e-19 seq964 111 1e-19 seq937 102 8e-17 >seq959 Length=5381930 Score = 132 bits (146), Expect = 4e-26 Identities = 169/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| || || ||||||| || || || || ||| |||||||| ||||| ||||| | Sbjct 731836 CGCCACCACGAAGACGTAGAACAAGGTGAAGTGTGGATTCCTTCTGTATGTTGTAGTCTG 731777 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 ||||| | |||| ||||||||||| |||||||| || || || || ||||||| | Sbjct 731776 CTAGGGTTCTGCCGTCTTCGAGCTGCTTCCCGGCGAAGATGAGACGTTGCTGGTCCGGTG 731717 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTC 41811 ||| || |||||||||| |||||| ||| || | || | ||||| ||||| Sbjct 731716 GAATGCCCTCCTTGTCCTGGATTTTGGCCTTGACATTGTCG--ATGGTGTCAGAAGACTC 731659 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || || || || ||||| || || || |||||||||||||| Sbjct 731658 GACCTCAAGGGTGATAGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 731608 >seq977 Length=5547227 Score = 118 bits (130), Expect = 1e-21 Identities = 167/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | || |||||||| ||| ||||||||| || || || ||| Sbjct 1049990 CCGCCTCGAAGACGAAGGACAAGATGCAGGGTGGACTCCTTCTGGATATTGTAATCGACT 1049931 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || |||||| | || || |||||||| |||||||| || || | |||||| || | ||| Sbjct 1049930 AGAGTGCGCCCATCCTCAAGCTGCTTTCCGGCGAAGATAAGCCTCTGTTGATCAGGGGGG 1049871 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | | |||||||||| ||| | || |||| || | | | || || |||| || Sbjct 1049870 ATCCCCTCCTTGTCC-TGAATCTTGGCTTTCACATTGTCTATGGTATCAGAGCTC---TC 1049815 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| || || || || || |||| ||||| || ||||||||||| Sbjct 1049814 CACCTCCAGTGTAATTGTCTTCCCAGTCAATGTCTTCACAAAAATCTGCAT 1049764 Score = 113 bits (124), Expect = 4e-20 Identities = 165/232 (71%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || ||| |||||||||||||||||| |||| Sbjct 1026531 CCACCACGGAGACGGAGAACGAGATGGAGGGTGGACTCCTTCTGAATGTTATAATCGGCT 1026590 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| ||||| || ||||||||||| || |||||||| || || | || Sbjct 1026591 AGGGTCCGACCGTCCTCGAGTTGTTTGCCGGCGAAGATTAGGCGCTGCTGATCGGGAGGG 1026650 Query 41756 ACGCTCTCCTTGTCCATGATTTT----TTG-CTTCAACGACGACACAGTGTCGCTCGACT 41810 | || ||||||||| ||| || ||| | | | ||| | || ||| || Sbjct 1026651 ATGCCCTCCTTGTCTTGGATCTTAGCCTTGACATTATCGATG-----GTATCGGAACTCT 1026705 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | ||||| | || || |||||||| || || || || || || |||||||| Sbjct 1026706 CGACCTCGAGAGTGATGGTTTTACCGGTTAGGGTTTTCACAAAGATCTGCAT 1026757 Score = 109 bits (120), Expect = 5e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | || ||||| || ||| |||||||||||||||||| |||| Sbjct 1049307 GCCCCCGCGGAGTCGGAGAACGAGATGGAGGGTGGACTCCTTCTGAATGTTATAATCGGC 1049248 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| || || |||| ||||| |||||||||||||| || |||||||| || || | || Sbjct 1049247 GAGCGTCCGGCCGTCCTCGAGTTGCTTGCCGGCGAAAATGAGGCGCTGCTGATCTGGAGG 1049188 Query 41755 AACGCTCTCCTTGTC 41769 || | |||||| || Sbjct 1049187 AATACCCTCCTTATC 1049173 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || | |||||| | ||||||||| |||||| ||| || ||||||||||| || | Sbjct 1025847 CCACCCCTTAGACGCAGCACCAGATGAAGCGTGGACTCTTTTTGAATGTTATAATCCGCC 1025906 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCGGG 41754 ||||| || |||| || | |||||| || || || |||| | ||||||||| | ||| Sbjct 1025907 AGGGTTCGGCCGTCTTCCAACTGCTTCCCAGCAAAGATCAATCTTTGTTGGTCCGGAGGG 1025966 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTG-CTTCA-ACGACGACACAGTGTCGCTCGACTCC 41812 | | || ||||| ||| ||| | |||| ||| | | | | | ||| || || Sbjct 1025967 ATCCCT-TCCTTATCC-TGAATCTTTGTCTTGACATTATCA-ATAGTATCAGAACTTTCA 1026023 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || || |||||||| || || || || || || |||||||| Sbjct 1026024 ACCTCAAGTGTGATGGTTTTACCGGTGAGGGTTTTGACAAAGATCTGCAT 1026073 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || | || || ||||| || || ||||||||| ||||| || || | Sbjct 1026075 CCACCGCGGAGCCTCAAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGCC 1026134 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||| | |||| || | |||||| ||||| || ||||||||||| || || | ||| Sbjct 1026135 AAGGTTCTGCCGTCCTCCAACTGCTTCCCGGCAAAGATCAGGCGCTGCTGATCAGGAGGA 1026194 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | | ||||| | | ||| | ||||| | ||| | | | || || ||| ||| Sbjct 1026195 ATCCCTTCCTTAT-CTTGAATCTTTGCCTTCACGTTGTCTATCGTATCAGAGCT---CTC 1026250 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| ||| ||||| ||||| || || || || || ||||| ||||| Sbjct 1026251 GACCTCCAACGTAATCGTCTTACCAGTTAGGGTTTTGACAAAAATTTGCAT 1026301 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 || || ||||| || || |||||||||||| || || || | | ||| | |||| Sbjct 1049747 AAAACGAGATGTAGGGTAGACTCCTTCTGAATATTGTAATCCGCCAAGGTTCTGCCGTCT 1049688 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || | |||||| || || || ||||||||||| || |||| |||| || ||||| ||| Sbjct 1049687 TCCAACTGCTTCCCAGCAAAGATCAGGCGCTGCTGATCCGGAGGAATGCCTTCCTTATCC 1049628 Query 41771 ATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA---CTCCACCTCCACCGTTATC 41827 ||| | ||||| | ||| | | | ||| | ||| ||| ||||||| || ||| Sbjct 1049627 -TGAATCTTTGCCTTCACGTTGTC-TATTGTATC-CGAGCTCTCGACCTCCAAGGTAATC 1049571 Query 41828 GTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| || || || || || ||||| ||||| Sbjct 1049570 GTCTTACCAGTTAGGGTTTTGACAAAAATTTGCAT 1049536 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||||||| || ||| ||| |||||||||||||| |||| Sbjct 4465820 CCACCACGGAGGCGCAGGACCAGATGGAGGGTGGACTCTTTCTGAATGTTATAATCGGCA 4465761 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || || ||| | |||| ||| || |||||||| || |||| || Sbjct 4465760 AGTGTACGTCCGTCCTCCAGTTGCATCCCGGAGAAGATAAGGCGCTGGTGATCCGGAGGG 4465701 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 || |||||| || |||||| |||| ||| | | || || ||| || Sbjct 4465700 MTGCCCTCCTTATCTTGGATTTTGGCCTTC-ACGTTATCGATGGTATCTGAACTCTCAAC 4465642 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | |||| || || || || || |||| ||||| |||||||| Sbjct 4465641 CTCGAGAGTTACGGTCTTGCCAGTTAGGTTCTTCACGAAGATCTGCAT 4465594 >seq978 Length=8767375 Score = 111 bits (122), Expect = 1e-19 Identities = 144/195 (74%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 |||||||||||||||||||| | || || ||| |||| ||||||||||||||||| || Sbjct 3245884 TCCTTCTGAATGTTATAGTCAGCAAGAGTACGCCCGTCCTCGAGCTGCTTGCCGGCAAAG 3245943 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 |||| | ||| ||||| | || | | |||||||||| ||| ||||||| | || Sbjct 3245944 ATCAATCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCC-TGAATTTTTGCCTTGACATT 3246002 Query 41792 GAC-ACAGTGTC---GCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTT 41847 | | | || || ||| ||| ||||||| || || || || || |||| ||||| Sbjct 3246003 GTCGATGGTATCAGAGCT---CTCAACCTCCAGAGTAATGGTCTTCCCTGTCAAGGTCTT 3246059 Query 41848 TACGAAAATCTGCAT 41862 ||||| |||||||| Sbjct 3246060 CACGAAGATCTGCAT 3246074 Score = 102 bits (112), Expect = 8e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||||||||| || || | || |||||| |||| || |||||||||||||| || Sbjct 3246111 CTCCTTCTGAATGTTGTAATCAGCAAGAGTGCGCCCGTCTTCAAGCTGCTTGCCGGCAAA 3246170 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 ||||| | ||| ||||| | || | | |||||| | | ||| |||| |||| ||| Sbjct 3246171 TATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTAT-CTTGAATTTTGGCTTTCACGT 3246229 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | | || || ||| || |||| || || || || || || || ||||| | Sbjct 3246230 TGTCAATGGTATCAGAACTCTCGACTTCCAGAGTAATGGTCTTTCCAGTGAGAGTCTTCA 3246289 Query 41850 CGAAAATCTGCAT 41862 ||||||||||||| Sbjct 3246290 CGAAAATCTGCAT 3246302 >seq964 Length=1826015 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| || || ||| |||||||||||||||||||| | ||||||||| |||| ||| Sbjct 764292 ACCAAGTGAAGGGTGGATTCCTTCTGAATGTTATAGTCAGCAAGGGTGCGCCCGTCCTCG 764351 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||||||||| || |||| | ||| ||||| | || | | ||||||| | || Sbjct 764352 AGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGGATACCTTCCTTGT-CTTG 764410 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | |||| |||| || | | | || || ||| ||||||| || || || || Sbjct 764411 AATTTTAGCTTTCACATTGTCAATGGTATCAGAACTCTCGACCTCCAGGGTGATGGTCTT 764470 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || ||||| ||||| |||||||| Sbjct 764471 TCCAGTGAGGGTCTTCACGAAGATCTGCAT 764500 Score = 111 bits (122), Expect = 1e-19 Identities = 166/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || ||| ||||||||| ||||| || |||| Sbjct 764502 CCACCACGGAGACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCC 764561 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || || ||||||||||| || || |||| | ||| ||||||| ||| Sbjct 764562 AAAGTGCGACCYTCCTCCAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCGGAGGA 764621 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | || |||||| ||| || | || || | |||| | | | ||||| ||| ||| Sbjct 764622 ATGCCCTCCTTATCC-TGGATCTTGGCCTTAACGTTGTCGATTGTGTCAGAGCT---CTC 764677 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||||| || || || || || || || ||||| ||||| || |||||| Sbjct 764678 CACCTCCAAGGTGATTGTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCATG 764729 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | || || || || ||| ||||||||| ||||| ||||| | Sbjct 763817 GCCACCGCGAAGACGGAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 763876 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || | || || | ||||| || || || |||| | || ||||| | ||| Sbjct 763877 CAGAGTACGTCCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGCTGGTCGGGGGG 763936 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGACGACACAGTGTCGCTCGACTCCA 41813 || | |||||||||| |||||| ||||| | | | | |||||| ||||| Sbjct 763937 AATACCCTCCTTGTCCTGGATTTTAGCCTTCACATTATCA-ATTGTGTCGGAACTCTCCA 763995 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| || || || || || ||||| ||||| || ||||||||||| Sbjct 763996 CCTCCAAAGTGATGGTCTTTCCTGTCAGGGTCTTCACAAAAATCTGCAT 764044 Score = 100 bits (110), Expect = 3e-16 Identities = 155/215 (72%), Gaps = 10/215 (5%) Strand=Plus/Plus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||| ||||| || |||||| || || || ||||| | || ||||| | || || Sbjct 764063 CACCAAGTGCAGTGTAGACTCCTTTTGGATATTGTAGTCAGCAAGAGTGCGGCCATCCTC 764122 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 |||||||||||| ||||| |||| | ||| || |||| || | | |||||||||| | Sbjct 764123 GAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCCGGTGGGATTCCCTCCTTGTCC-T 764181 Query 41773 GATTTTTTG-CTTCA-ACGACGACACAGTGTC---GCTCGACTCCACCTCCACCGTTATC 41827 || |||||| ||||| | | | | ||| || ||| ||||||||| | || || Sbjct 764182 GAATTTTTGCCTTCACATTATCA-ATAGTATCAGAGCT---CTCCACCTCAAGAGTAATG 764237 Query 41828 GTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || |||| ||||| ||||| |||||||| Sbjct 764238 GTCTTCCCGGTCAAGGTCTTCACGAAGATCTGCAT 764272 >seq937 Length=9237706 Score = 102 bits (112), Expect = 8e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| || ||||||||| |||||||| || | ||||| | | || ||| Sbjct 196079 ACCAGGTGCAGGGTAGACTCCTTCTGGATGTTATAATCCGCTAGGGTTCTGCCATCCTCG 196020 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||| |||||||| || || ||||| || || | || | || ||||| | | || Sbjct 196019 AGCTGCTTACCGGCGAAGATAAGCCGCTGCTGATCAGGTGGGATGCCTTCCTTAT-CTTG 195961 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | || || | || | | | |||||| || || ||||||| ||||| || || Sbjct 195960 GATCTTAGCCTTGACATTGTCAATGGTGTCGGAGGATTCGACCTCCAGGGTTATGGTCTT 195901 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||||| || || || ||||| |||||||| || Sbjct 195900 ACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 195868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462298342554800