Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq25760 127 2e-24 >seq25760 Length=3792821 Score = 127 bits (140), Expect = 2e-24 Identities = 389/587 (66%), Gaps = 17/587 (3%) Strand=Plus/Plus Query 16201 ACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAA 16260 ||||||||| ||||| |||| || || |||| ||| | ||||| ||||| || | Sbjct 707908 ACACGCGAAATCGCAGTGTAAGCCCTCATCTCGTGAGATTAACTCGTTTGAAAATGTCAG 707967 Query 16261 CCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAAGA 16319 || |||||| || || || || | ||| |||||||| ||| || || || |||| Sbjct 707968 ACCCGGCATTAACCCACGCTTTTTAAGCCAAAATATCGC-GCAGAAACTTCCAGAGAAGA 708026 Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGT-TCCGCGTACGTAGC--ATCTTTAT 16376 | || || |||||| | || ||||| || |||| | || || | | | | | | | Sbjct 708027 AAATCCCTTCAACACAAGCGAAAGCAAT-AATCCTCTCAGCAAAAGATTCCGAGCCGTCT 708085 Query 16377 TACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGG 16436 ||||||||| |||| || ||||| | ||| ||| | ||| || || | Sbjct 708086 -----ATCCATTTCAAAGCCCACTCCGCTTTCTTCGCTATGCAAGGAACCGTCTCGATAG 708140 Query 16437 CCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGT 16496 | | |||||| | ||||| | || | ||||| || || | || | | || Sbjct 708141 CGTGAAACAAACGGTTCTTTTCATTGGAGTCTTTGATATAAGTCTCCAACAAAAGAGAGT 708200 Query 16497 ACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAA-GCATCGAGCCTCC 16555 ||||||| ||||| |||||||| || || || || || || ||||| ||| || ||||| Sbjct 708201 ACATTTCAGAGTGGATGTTCTCAATAGCGATTTGGAAACCGTAGAAAGCA-CGCGCCTCA 708259 Query 16556 GCTATTTGTACTTCCA-CGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACT 16614 || | ||| || || | ||||| || | || ||||| ||| ||||||||||| Sbjct 708260 GCCACTTGAACCTCTTTCATAAAA-CGGCCGGCGAGGTTTTCAAGGACGATACCGTCGGA 708318 Query 16615 TGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATG 16674 || || || || || | | ||| ||||| | ||||| || | || || | Sbjct 708319 GGCGGCGAAGAAGGCGAGGACGTGAGAGATGAAGTGCTTTTCATCGGGAGTTAGGGATTC 708378 Query 16675 CCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGC 16734 ||| | | ||||| || | ||||||||| |||| ||||||||| || | || Sbjct 708379 CCAGTGACGGAGATCTTGAGAGAGATCCACTTCCTCTGCCGTCCAAAATGATGCTTCGGC 708438 Query 16735 CTTTTTATACATTTTCCAAATATCATTGTATTGTA-TGGGAA-ATAC 16779 ||||| ||||||| |||||| || |||||| | |||||| |||| Sbjct 708439 TTTTTTGTACATTTCCCAAATTTCTGGGTATTGGATTGGGAACATAC 708485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511249705385160