Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq25760 266 4e-66 seq24687 105 8e-18 seq25599 84.2 3e-11 >seq25760 Length=3792821 Score = 266 bits (294), Expect = 4e-66 Identities = 413/586 (70%), Gaps = 8/586 (1%) Strand=Plus/Plus Query 24129 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 24188 |||||||| |||||||||||||||| ||||| |||| ||||| ||||| ||||| Sbjct 707903 ATCAAACACGCGAAATCGCAGTGTAAGCCCTCATCTCGTGAGATTAACTCGTTTGAAAAT 707962 Query 24189 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGA 24247 || || || ||||||| ||||||||||||||||||||||| | |||| || |||||| Sbjct 707963 GTCAGACCCGGCATTAACCCACGCTTTTTAAGCCAAAATATCG-CGCAGAAACTTCCAGA 708021 Query 24248 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC---CGGCGCT 24304 |||||||| ||||| || || || ||||||| || || || || | | || Sbjct 708022 GAAGAAAATCCCTTCAACACAAGCGAAAGCAATAATCCTCTCAGCAAAAGATTCCGAGCC 708081 Query 24305 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTAT 24364 ||| |||||| || |||||| || || ||||| || ||||| | ||||| || Sbjct 708082 GTC---TATCCATTTCAAAGCCCACTCCGCTTTCTTCGCTATGCAAGGAACCGTCTCGAT 708138 Query 24365 AGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACT 24424 ||| | ||| | | ||| |||||||| ||||| | ||| || || | ||||||| Sbjct 708139 AGCGTGAAACAAACGGTTCTTTTCATTGGAGTCTTTGATATAAGTCTCCAACAAAAGAGA 708198 Query 24425 ATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTC 24484 |||||||| || || ||||| ||||| || ||||| || ||||||||| | ||||| Sbjct 708199 GTACATTTCAGAGTGGATGTTCTCAATAGCGATTTGGAAACCGTAGAAAGCACGCGCCTC 708258 Query 24485 GGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 24544 | | || || ||| | ||| || | || | |||||| || || ||||| Sbjct 708259 AGCCACTTGAACCTCTTTCATAAAACGGCCGGCGAGGTTTTCAAGGACGATACCGTCGGA 708318 Query 24545 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATT 24604 ||| || || || || | || || || || | ||||| || || ||||| | Sbjct 708319 GGCGGCGAAGAAGGCGAGGACGTGAGAGATGAAGTGCTTTTCATCGGGAGTTAGGGATTC 708378 Query 24605 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 24664 ||| | | || ||||| ||| | ||||||||| || | |||||||||||||| || || Sbjct 708379 CCAGTGACGGAGATCTTGAGAGAGATCCACTTCCTCTGCCGTCCAAAATGATGCTTCGGC 708438 Query 24665 CTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 24710 ||||| ||||| | ||| || || | ||||| ||||| || ||| Sbjct 708439 TTTTTTGTACATTTCCCAAATTTCTGGGTATTGGATTGGGAACATA 708484 >seq24687 Length=27406 Score = 105 bits (116), Expect = 8e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 |||||| ||||| | || | || || | ||| | || || |||||||||| |||||| Sbjct 5054 TCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCTTAACATTGGAACAATACC 5113 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 ||| |||| ||||| || || |||||||| || ||||||||||||| ||| || Sbjct 5114 ATTAGATGTCCCATTTGTTCCTCGAATATAGCTGCCTGTGGCACGAATATTGTGAATAGA 5173 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 | ||| || || || || ||| ||| | || || |||| |||||||| || Sbjct 5174 GACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTTAGAGTATCATAAAT 5233 Query 54364 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 54406 ||| || ||||||||||| ||||| | | ||| |||||| Sbjct 5234 GCCTTCAATACTATCATCTTTCATGCACACCAAAAAGCAGCTA 5276 >seq25599 Length=502261 Score = 84.2 bits (92), Expect = 3e-11 Identities = 116/159 (73%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 53936 AGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCC 53995 |||||||| || ||||| || || |||||| || |||| |||||| ||||| Sbjct 182829 AGTGTATAATTTC--TCAAATTCTTCACCCCAACAATCAGCCAAACCAGGAGCTTCATTA 182772 Query 53996 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 54055 || || | ||| ||||| || ||| | |||| || ||||||||||||||||||| Sbjct 182771 GGGCAAAACAAAGACCAGCTGCCATCACCTCGGACTCTTTCCATAAAGAGATCAGGAATC 182712 Query 54056 CAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTC 54093 |||||||| ||| || | |||||| | || | |||| || Sbjct 182711 CAAAGAGC-ATAGAACAAATCTCTAGCTCGACGTTCTTC 182674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593530399380240