Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq25319 131 1e-25 seq25716 122 7e-23 seq25634 116 3e-21 seq25744 113 4e-20 seq25310 105 6e-18 >seq25319 Length=181645 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || | ||| |||| || | ||||||||||| |||||||| ||||| || Sbjct 59263 CCACCTCTGAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCG 59204 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||||||||||||||| ||| | || || ||||||||||| ||| Sbjct 59203 AGGGTACGGCCATCCTCCAGCTGTTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGA 59144 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| ||||| || || | | | | ||| || | ||| | Sbjct 59143 ATACCTTCCTTGTCCTGAATCTTGGCCTTAACATTGTCAATAGTGTCCGAGCTCTCAACT 59084 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| |||||| |||||||| || | || || ||||| |||||||| Sbjct 59083 TCCAAGGTAATAGTCTTGCCAGTGAGGGTCTTCACAAAAATTTGCAT 59037 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || | ||| |||| || | ||||||||||| |||||||| |||||||| Sbjct 59035 CCACCTCTAAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGCG 58976 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||||||||||||||| ||| | || || ||||||||||| ||| Sbjct 58975 AGGGTACGGCCATCCTCCAGCTGTTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 58916 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| ||||| ||| || | | | | || || | ||| Sbjct 58915 ATTCCCTCCTTGTCCTGTATCTTGGCTTTAACATTGTCAATTGTGTCTGAGCTCTCAACC 58856 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | |||||| |||||||| || | || || ||||| || ||||| Sbjct 58855 TCTAAGGTAATAGTCTTGCCAGTGAGAGTCTTCACAAAAATCTGCAT 58809 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || |||| |||||||| || | ||||||||||| |||||||| ||||| || Sbjct 59491 CCACCACGGAGCCGGAGCACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCT 59432 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || || ||||| || || ||| | ||||| ||||| ||||| ||| Sbjct 59431 AGGGTGCGACCATCTTCAAGCTGCTTCCCAGCAAAGATAAGCCTCTGTTGGTCTGGGGGA 59372 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| ||||| || || | | | | || || | ||| | Sbjct 59371 ATACCCTCCTTGTCCTGAATCTTGGCCTTAACATTGTCAATTGTGTCCGAGCTCTCAACT 59312 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| |||||| |||||||| || | || || ||||| |||||||| Sbjct 59311 TCCAAGGTAATAGTCTTGCCAGTGAGGGTCTTCACAAAAATTTGCAT 59265 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 ||||| || |||||||| || ||||| || || ||||||||| || | ||||||| || Sbjct 59923 TGCAATGTAGACTCCTTCTGGATGTTGTAATCTGCCAGGGTTCGGCCATCCTCCAATTGC 59864 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 || || ||| | || || || ||||||||| || | ||||||||||| ||| || Sbjct 59863 TTCCCAGCAAAGATCAGCCTTTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGGATTTTA 59804 Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTT 21152 ||||| | | | | ||||| | ||| ||| | || || || || || || Sbjct 59803 GCCTTCACATTGTCAATGGTATCTGAGCTCTCAACTTCAAGAGTGATAGTTTTCCCAGTC 59744 Query 21153 AACGTTTTGACAAATATTTGCAT 21175 | || ||||||||||||||||| Sbjct 59743 AGAGTCTTGACAAATATTTGCAT 59721 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || ||||||||||||||||||||||| || || || | | || || |||||||| || Sbjct 58777 GTTGACTCCTTTTGAATGTTATAGTCAGCAAGAGTGCGACCATCTTCGAGCTGTTTTCCA 58718 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || | || || || || || | || |||||||| ||||||| |||| Sbjct 58717 GCAAAGATCAACCTTTGTTGATCTGGAGGGATCCCCTCCTTGTCTTGGATCTTTGCTTTC 58658 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| || || | ||| || | ||| ||||||||||| || | ||| Sbjct 58657 ACATTGTCGATGGTGTCTGAGCTTTCCACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTT 58598 Query 21159 TTGACAAATATTTGCAT 21175 || ||||| |||||||| Sbjct 58597 TTAACAAAGATTTGCAT 58581 >seq25716 Length=1210045 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| ||||||||||| ||||| || || || ||||| || Sbjct 962785 CCACCACGAAGGCGGAGCACCAAGTGCAAAGTGGATTCCTTCTGGATATTGTAGTCAGCA 962726 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||||||||| || |||||| | || || ||||||||||| || Sbjct 962725 AGGGTGCGGCCATCCTCCAGCTGCTTACCCGCAAAGATCAGCCTCTGCTGGTCTGGTGGT 962666 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| ||||| || || | | | | ||||| | ||| Sbjct 962665 ATCCCTTCCTTGTCCTGAATCTTGGCCTTGACATTGTCTATGGTATCCGAGCTCTCAACC 962606 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| || |||||||| || | ||||| ||||| |||||||| Sbjct 962605 TCCAGGGTGATTGTCTTGCCAGTGAGGGTTTTTACAAAGATTTGCAT 962559 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| ||| | || || ||||||||||| || |||||||| Sbjct 963013 CCACCACGGAGACGGAGCACCAGATGAAGGGTTGATTCCTTTTGAATATTGTAGTCCGCA 962954 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | ||||| ||||| || || ||| |||| || ||||||||||| || Sbjct 962953 AGGGTGCGCCCATCCTCTAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCAGGTGGG 962894 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||| ||||| |||||| || || | | | | ||| ||| | ||| Sbjct 962893 ATACCTTCTTTGTCCTGGATCTTAGCCTTGACATTGTCAATAGTGTCAGAGCTCTCAACC 962834 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| || ||||| || || | ||||| ||||| |||||||| Sbjct 962833 TCCAGGGTGATTGTCTTACCAGTGAGAGTTTTCACAAAGATTTGCAT 962787 >seq25634 Length=602113 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| || | ||||| ||||| |||||||||||||| || Sbjct 349004 CCACCACGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTCTGAATGTTATAGTCGGCA 348945 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || ||| | | ||||| ||||| || || ||| | ||||| |||||||| || || Sbjct 348944 AGTGTTCGCCCATCCTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGG 348885 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| || || | | | | |||||| |||| Sbjct 348884 ATCCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTATCAGAACTCTCCACC 348825 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||||| ||||||||||| | || || ||||| |||||||| Sbjct 348824 TCCAAAGTAATAGTCTTGCCGGTGAGGGTCTTCACAAAGATTTGCAT 348778 >seq25744 Length=1702523 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| ||||||||| |||||||| || ||||| |||||||| || || || |||| Sbjct 948279 AGCACCAGATGCAAAGTAGACTCCTTCTGGATGTTGTAGTCCGCAAGTGTACGGCCGTCT 948220 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || || || || || || | || || | ||||||||| || | |||||||||||| Sbjct 948219 TCGAGTTGCTTTCCTGCGAAGATTAGCCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTCT 948160 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | ||| ||||| || || || | ||| |||||| Sbjct 948159 TGGATCTTGGCCTTCACATTGTCGATGGTATCGGAGGATTCAACCTCTAGGGTTATGGTC 948100 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || || |||| ||||| || || || ||||| || Sbjct 948099 TTACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 948065 >seq25310 Length=177726 Score = 105 bits (116), Expect = 6e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || |||||||||||||| | ||| | |||||||||||| || |||||||| || || Sbjct 166079 CCACCGCGCAGCCTGAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTATAATCGGCG 166138 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | ||||| | ||| || || ||| | || || |||||||| || || Sbjct 166139 AGGGTCCTTCCATCCTCTAACTGCTTCCCAGCAAAGATGAGCCTCTGCTGATCAGGTGGG 166198 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGC--TCCG 21126 | |||||||| || ||||| |||||| | | | |||| ||| || || Sbjct 166199 ATCCCTTCCTTATCTTGAATCTTCGCTTTCACGTTATCAATCGTAT--CCGAGCTTTCAA 166256 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| | ||| |||||||||||||| | || || ||||| || ||||| Sbjct 166257 CTTCAAGGGTTATGGTCTTGCCGGTAAGGGTCTTCACAAAGATCTGCAT 166305 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | ||| || |||||||| |||||||| || ||| Sbjct 166535 CCGCCACGGAGACGGAGGACCAGGTGAAGAGTAGATTCCTTTTGGATGTTATAATCGGCC 166594 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || || |||| || ||||| || || || | || | || || ||||| || Sbjct 166595 AAAGTACGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAACCTTTGTTGGTCAGGTGGG 166654 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||| ||||| |||||| ||||| | ||| |||||| | |||| Sbjct 166655 ATCCCTTCTTTGTCTTGGATCTTGGCCTTCACATTATCGATGGTATCAGAGCTCTCCACC 166714 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 |||| ||||| || || |||||||| ||||||||||| || ||||| || Sbjct 166715 TCCAGAGTAATTGTTTTCCCGGTTAAAGTTTTGACAAAGATCTGCATATT 166764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422126616285308