Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq25744 143 3e-29 seq25573 123 3e-23 seq25319 114 1e-20 seq25716 111 2e-19 seq25634 107 2e-18 seq25706 102 8e-17 seq25079 87.8 2e-12 seq25310 86.0 6e-12 >seq25744 Length=1702523 Score = 143 bits (158), Expect = 3e-29 Identities = 171/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 |||| ||||| || ||||| ||||| || ||||| || ||||| ||| | || || ||| Sbjct 948063 GAAAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATAACCCTAGAGGTTGAAT 948122 Query 40745 CCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 || |||| | | | | | | |||| || || | ||||| || |||||||| ||| Sbjct 948123 CCTCCGATACCATCGACAATGTGAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCGG 948182 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 |||||||||| || |||| ||| || || || || || |||| || || || |||| Sbjct 948183 ACCAGCAACGGCTAATCTTCGCAGGAAAGCAACTCGAAGACGGCCGTACACTTGCGGACT 948242 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||||||| | || ||||||| ||| |||| ||||| || || Sbjct 948243 ACAACATCCAGAAGGAGTCTACTTTGCATCTGGTGCTGCGATTGAGAGGAGG 948294 >seq25573 Length=429841 Score = 123 bits (136), Expect = 3e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || || ||||| || ||||| ||||| || ||| | || || || | Sbjct 359631 AAATATGCAGATCTTTGTGAAAACCCTAACGGGGAAAACAATAACCCTAGAGGTAGAGTC 359572 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | | |||| ||||| | ||||| || || || ||| |||| Sbjct 359571 ATCAGACACAATCGACAATGTGAAGGCCAAAATCCAAGACAAGGAAGGTATACCCCCGGA 359512 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||| ||||| | |||| ||| || || ||||| || |||| ||||| ||| |||||| Sbjct 359511 CCAACAACGTTTAATCTTCGCCGGAAAGCAGCTTGAGGACGGCCGCACGCTCGCCGACTA 359452 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 ||||||||| ||||| | || || || || ||| | |||||| | ||||||| Sbjct 359451 CAACATCCAAAAGGAATCAACCCTCCACCTTGTGCTCCGCTTGCGTGGCGGCG 359399 >seq25319 Length=181645 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || ||||| ||||| || || ||| | || || || | | Sbjct 59037 ATGCAAATTTTTGTGAAGACCCTCACTGGCAAGACTATTACCTTGGAAGTTGAGAGCTCG 59096 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| || |||| ||||| || || || ||| | |||||| Sbjct 59097 GACACTATTGACAATGTTAAGGCCAAGATTCAGGACAAGGAAGGTATTCCCCCAGACCAG 59156 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | ||||||| || |||||||||||||| || | || |||||| |||||||||| Sbjct 59157 CAGAGGCTCATCTTTGCTGGCAAACAGCTGGAGGATGGCCGTACCCTCGCCGACTACAAC 59216 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 || ||||||||| |||| || || Sbjct 59217 ATTCAGAAGGAGTCCACCCTTCA 59239 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| ||||| || || ||| | || || || | | Sbjct 58809 ATGCAGATTTTTGTGAAGACTCTCACTGGCAAGACTATTACCTTAGAGGTTGAGAGCTCA 58868 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | || | || || | ||||| ||||| |||||| | |||||| Sbjct 58869 GACACAATTGACAATGTTAAAGCCAAGATACAGGACAAGGAGGGAATCCCCCCAGACCAG 58928 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | ||||||| || |||||||||||||| || | || |||||| ||||||||| Sbjct 58929 CAGAGGCTCATCTTTGCTGGCAAACAGCTGGAGGATGGCCGTACCCTCGCGGACTACAAC 58988 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 || ||||||||| |||| || || Sbjct 58989 ATTCAGAAGGAGTCCACCCTTCA 59011 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || ||||| ||||| || || ||| | || || || | | Sbjct 59265 ATGCAAATTTTTGTGAAGACCCTCACTGGCAAGACTATTACCTTGGAAGTTGAGAGCTCG 59324 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| || |||| ||||| ||||| || ||| | ||||| Sbjct 59325 GACACAATTGACAATGTTAAGGCCAAGATTCAGGACAAGGAGGGTATTCCCCCAGACCAA 59384 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || || || ||||| || || | |||||||| ||||||||| Sbjct 59385 CAGAGGCTTATCTTTGCTGGGAAGCAGCTTGAAGATGGTCGCACCCTAGCTGACTACAAC 59444 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 || ||||||||| |||| || || Sbjct 59445 ATTCAGAAGGAGTCCACCCTTCA 59467 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| ||||| || || || || || || |||||||| ||| | || || || | | Sbjct 59493 ATGCAGATATTTGTTAAGACTCTTACTGGGAAAACCATTACCTTGGAGGTTGAGAGCTCT 59552 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| ||||||| ||||||||||| || || |||| ||| Sbjct 59553 GACACCATTGATAATGTGAAGGCTAAAATTCAGGACAAAGAGGGGATTCCACCGGATCAG 59612 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| | | || | || || || ||||| || || | | || | ||||| ||| Sbjct 59613 CAAAGGTTGATTTTTGCAGGAAAGCAGCTTGAAGATGGAAGGACTTTGGCTGACTATAAC 59672 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||| | || || ||| | |||||||| Sbjct 59673 ATCCAGAAGGAATCAACCCTTCATTTGGTGTTGCG 59707 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||||||||| || || || || || || ||||| ||||| | || || || | | Sbjct 59721 ATGCAAATATTTGTCAAGACTCTGACTGGGAAAACTATCACTCTTGAAGTTGAGAGCTCA 59780 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | |||| ||||| | ||||| || || || || |||||||| Sbjct 59781 GATACCATTGACAATGTGAAGGCTAAAATCCAGGACAAGGAAGGGATTCCACCGGACCAG 59840 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| | || |||| || || || || |||| || | || ||||| || |||||| Sbjct 59841 CAAAGGCTGATCTTTGCTGGGAAGCAATTGGAGGATGGCCGAACCCTGGCAGATTACAAC 59900 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| | || |||| || || |||| Sbjct 59901 ATCCAGAAGGAGTCTACATTGCACCTTGTCCTGCG 59935 >seq25716 Length=1210045 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || |||||||| ||||| ||||| || |||||| | || || || | | Sbjct 962559 ATGCAAATCTTTGTAAAAACCCTCACTGGCAAGACAATCACCCTGGAGGTTGAGAGCTCG 962618 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||||| || |||| ||||| || || || || | |||||| Sbjct 962619 GATACCATAGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGGATACCACCAGACCAG 962678 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| ||||| || |||||||| || | |||||||| |||||||| Sbjct 962679 CAGAGGCTGATCTTTGCGGGTAAGCAGCTGGAGGATGGCCGCACCCTTGCTGACTACAAT 962738 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||||||||| |||| |||| | ||| | ||| Sbjct 962739 ATCCAGAAGGAATCCACTTTGCACTTGGTGCTCCGC 962774 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || |||||||| || || || |||||||| |||||| | || || ||| | | Sbjct 962103 ATGCAGATCTTCGTAAAGACACTAACTGGCAAAACTATCACCCTTGAGGTGGAAAGCTCT 962162 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | || |||||||| ||||| | ||||| Sbjct 962163 GACACCATTGACAATGTCAAGGCTAAGATCCAAGATAAAGAGGGTATCCCGCCAGACCAA 962222 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || || ||||||||||| || | ||||| || || ||||| Sbjct 962223 CAGAGGCTGATCTTTGCTGGTAAACAGCTGGAGGATGGCCGCACACTTGCTGATTACAAT 962282 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 || ||||||||| | || || || Sbjct 962283 ATTCAGAAGGAGTCTACTCTTCA 962305 >seq25634 Length=602113 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| || || ||||| || |||||| | || || ||| | | Sbjct 348322 ATGCAAATTTTCGTGAAAACCCTAACTGGCAAGACTATCACCCTTGAGGTAGAAAGCTCA 348381 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | || | || |||| ||||| ||||| || ||| |||||||| Sbjct 348382 GACACTATTGACAATGTAAAAGCTAAGATTCAAGACAAGGAGGGTATTCCCCCGGACCAG 348441 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| |||| || | || ||||| ||||| || || | |||||||| || || ||| Sbjct 348442 CAAAGACTGATTTTTGCTGGCAAGCAGCTTGAGGATGGACGCACCCTTGCTGATTATAAC 348501 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||| ||||| | || || || | ||| | || || ||||| || Sbjct 348502 ATCCAAAAGGAATCAACTCTCCACTTGGTGCTCCGATTAAGGGGTGG 348548 >seq25706 Length=1095516 Score = 102 bits (112), Expect = 8e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| ||||| || || |||||||| | || || || || | Sbjct 699833 ATGCAGATTTTCGTGAAAACCCTCACAGGAAAGACCATCACTCTGGAGGTGGAGAGCAGC 699774 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | || | ||||| | ||||| || || ||||| | ||||| Sbjct 699773 GACACAATAGACAACG-TGAAAGCCAAAATCCAAGACAAGGAAGGAATCCCACCAGACCA 699715 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||||| ||| || |||||||| || |||| |||||| | ||| || || Sbjct 699714 GCAACGTCTCATCTTCGCAGGAAAACAGCTCGAAGACGGCCGCACCTTAGCCGATTATAA 699655 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| || || || | || || || || || Sbjct 699654 CATTCAAAAAGAATCAACCCTCCACCTTGT 699625 >seq25079 Length=93044 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| |||||||| ||||| |||| ||||| ||||| || | || || || Sbjct 31606 AAATATGCAGATATTCGTTAAAACCTTCACCGGCAAGACCATAACTCTGGAGGTGGAGAG 31665 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | | |||||| || |||| || ||||| || | ||| | || Sbjct 31666 TTCTGACACCATCGATAATGTCAAGGCCAAGATTCAGGAAAAAGAAGGTACCCCACCTGA 31725 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||| ||||| |||| ||| || |||||||| | || | | || ||| || || Sbjct 31726 TGAGCAGCGACTTATCTTCGCCGGAAAACAGCTTGCGGATGGAAGGACACTCGCGGATTA 31785 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||| ||||||||||| | || || | ||| || Sbjct 31786 CAACGTCCAGAAGGAGTCAACACTCCGTCTTGT 31818 >seq25310 Length=177726 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||| ||| | || || ||| | | Sbjct 166305 ATGCAGATCTTTGTGAAGACCCTTACCGGCAAGACCATAACCCTTGAAGTTGAAAGCTCG 166246 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | || |||| | || | || |||| || || || || ||||| | || || Sbjct 166245 GATACGATTGATAACG-TGAAAGCGAAGATTCAAGATAAGGAAGGGATCCCACCTGATCA 166187 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | ||||||| || || || ||| | || || | | |||||| ||| || || Sbjct 166186 GCAGAGGCTCATCTTTGCTGGGAAGCAGTTAGAGGATGGAAGGACCCTCGCCGATTATAA 166127 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||||||||| |||| || ||||| ||| Sbjct 166126 CATCCAGAAGGAGTCCACTCTCCATCTTGTG 166096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515053280096880