Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq25716 100 3e-16 seq25310 100 3e-16 seq25634 96.9 4e-15 seq25761 82.4 9e-11 seq25711 82.4 9e-11 seq25319 82.4 9e-11 seq25260 82.4 9e-11 >seq25716 Length=1210045 Score = 100 bits (110), Expect = 3e-16 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||||||||||||||| || || || | || || ||||| |||||||| || Sbjct 962294 CTCCTTCTGAATATTGTAATCAGCAAGTGTGCGGCCATCCTCCAGCTGTTTACCAGCAAA 962235 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || | ||| ||||| | ||| | | ||| || || ||| || |||| | Sbjct 962234 GATCAGCCTCTGTTGGTCTGGCGGGATACCCTCTTTATCTTGGATCTTAGCCTTGACATT 962175 Query 43112 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | ||||| ||| |||||| || | ||||| |||||||| ||||| ||||| Sbjct 962174 GTCAATGGTGTCAGAGCT---TTCCACCTCAAGGGTGATAGTTTTGCCAGTTAGTGTCTT 962118 Query 43169 TACAAAGATTTGCAT 43183 ||| ||||| ||||| Sbjct 962117 TACGAAGATCTGCAT 962103 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| ||||| ||| ||||| || |||||||| ||||| || || || | || || Sbjct 962768 CACCAAGTGCAAAGTGGATTCCTTCTGGATATTGTAGTCAGCAAGGGTGCGGCCATCCTC 962709 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 ||||||||||| || || || || | ||||||||| | || | | ||||||||| | Sbjct 962708 CAGCTGCTTACCCGCAAAGATCAGCCTCTGCTGGTCTGGTGGTATCCCTTCCTTGTCC-T 962650 Query 43094 GATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 43149 || | || | |||| | | | || || |||| || || || | ||||| | Sbjct 962649 GAATCTTGGCCTTGACATTGTCTATGGTATCCGAGCTC---TCAACCTCCAGGGTGATTG 962593 Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | ||||| || || || ||||||||||||||||| Sbjct 962592 TCTTGCCAGTGAGGGTTTTTACAAAGATTTGCAT 962559 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||||||||||||||| || || || || ||| | || ||||||||||||||||| || Sbjct 962977 TCCTTTTGAATATTGTAGTCCGCAAGGGTGCGCCCATCCTCTAGCTGCTTACCAGCAAAA 962918 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || | ||||||||| | || | | || |||||| ||| || |||| | Sbjct 962917 ATCAGCCTCTGCTGGTCAGGTGGGATACCTTCTTTGTCCTGGATCTTAGCCTTGACATTG 962858 Query 43113 GCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 | | ||||| |||| || || || | ||||| || || || || || || || Sbjct 962857 TCAATAGTGTCAGAGCTC---TCAACCTCCAGGGTGATTGTCTTACCAGTGAGAGTTTTC 962801 Query 43170 ACAAAGATTTGCAT 43183 |||||||||||||| Sbjct 962800 ACAAAGATTTGCAT 962787 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||||||| | || ||| ||||||||||| || ||||| || || || | || || Sbjct 962540 CACCAAATGAAGGGTAGACTCTTTTTGAATATTATAGTCAGCAAGTGTACGACCATCCTC 962481 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 ||||||||| ||||||||||| || | |||||| || | || | | || |||||| | Sbjct 962480 TAGCTGCTTGCCAGCGAATATCAGCCTCTGCTGATCAGGTGGAATACCTTCTTTGTCC-T 962422 Query 43094 GATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 43149 || | || | |||| | | | ||||| ||| || || || | || || | Sbjct 962421 GAATCTTAGCCTTGACATTGTCAATGGTGTCTGAACTC---TCAACCTCCAGTGTAATTG 962365 Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | ||||| || || || || |||||||||||||| Sbjct 962364 TCTTGCCAGTGAGGGTTTTCACAAAGATTTGCAT 962331 >seq25310 Length=177726 Score = 100 bits (110), Expect = 3e-16 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| || || | |||| ||| | || ||| ||||| || || |||||||| Sbjct 154482 CCCCCTCTCAATCGGAGAACCAGATGAAGGGTTGACTCTTTTTGGATGTTATAATCAGCA 154541 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || |||| | || || |||||||| || ||||| || || | |||||| || | ||| Sbjct 154542 AGCGTCCTTCCATCCTCGAGCTGCTTTCCGGCGAAGATTAGCCTCTGCTGATCAGGCGGG 154601 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | | ||||| || ||| || |||| | | | |||||| |||| ||| Sbjct 154602 ATACCTTCCTTATCTTGGATCTTGGCCTTGACGTTATCGATCGTGTCAGAGCTC---TCC 154658 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||| || ||||| |||||||| || ||||| |||||||||||||| Sbjct 154659 ACCTCGAGAGTTATGGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 154708 Score = 84.2 bits (92), Expect = 3e-11 Identities = 153/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||| | ||| | |||| ||| || ||||||||||||||||| || || ||| | Sbjct 165862 ACGGAGCACAAGATGGAGTGTGGACTCTTTCTGAATATTGTAATCAGCAAGCGTACGCCC 165921 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || | |||||| || || ||||| || | |||||| || | || | | |||||| Sbjct 165922 ATCCTCCAACTGCTTCCCTGCAAATATCAGCCTCTGCTGATCAGGTGGAATCCCCTCCTT 165981 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCG 43143 | | ||| |||||| ||| | | | | ||||| |||| ||||| || | | Sbjct 165982 AT-CTTGAATTTTTGCTTTCACGTTATCAATTGTGTCCGAGCTC---TCCACTTCCAGTG 166037 Query 43144 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | ||||| || || || | ||||| || || || ||||| Sbjct 166038 TTATGGTCTTCCCTGTCAATGTCTTCACGAATATCTGCAT 166077 >seq25634 Length=602113 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| || | ||| ||| ||||||||||| |||||||| ||||| || | || || Sbjct 348759 CACCAAGTGGAGTGTAGACTCTTTTTGAATATTATAATCAGCAAGAGTGCGTCCATCCTC 348700 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 ||||| || ||||| || || | | |||||| || | || | | |||||||| | | Sbjct 348699 GAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGATCTGGGGGAATACCCTCCTTGT-CTT 348641 Query 43094 GATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 43149 || |||| | || | | | | | | ||||| ||| || || || | ||||| | Sbjct 348640 GAATTTTGGCTTTAACATTGTCAATAGTGTCTGAACTC---TCAACTTCCAAGGTGATAG 348584 Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | ||||| || || |||||||||||||| ||||| Sbjct 348583 TCTTGCCAGTAAGGGTCTTTACAAAGATCTGCAT 348550 >seq25761 Length=4684605 Score = 82.4 bits (90), Expect = 9e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 60058 AAAAT-TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||| || || ||| ||||||||| |||| |||||||||||||||| |||| Sbjct 1630945 AAAATGTTTCGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 1630886 Query 60117 TCACCACTATACTAC 60131 ||||||||||||||| Sbjct 1630885 TCACCACTATACTAC 1630871 >seq25711 Length=1136427 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||| |||| | || || ||| ||||||||| |||| |||||||||||||||| |||| Sbjct 840039 AAAGATTTACGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 839980 Query 60117 TCACCACTATACTAC 60131 ||||||||||||||| Sbjct 839979 TCACCACTATACTAC 839965 >seq25319 Length=181645 Score = 82.4 bits (90), Expect = 9e-11 Identities = 136/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||||||||| || || ||||| ||||| || | || || ||||| || ||||| || Sbjct 58772 CTCCTTTTGAATGTTATAGTCAGCAAGAGTGCGACCATCTTCGAGCTGTTTTCCAGCAAA 58713 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | | || || || | || | | ||||||||| ||| ||| ||| | | Sbjct 58712 GATCAACCTTTGTTGATCTGGAGGGATCCCCTCCTTGTCTTGGATCTTTGCTTTCACATT 58653 Query 43112 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | ||||| ||| |||||| || | |||||||| ||||| || || || || Sbjct 58652 GTCGATGGTGTCTGAGCT---TTCCACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTTTT 58596 Query 43169 TACAAAGATTTGCAT 43183 |||||||||||||| Sbjct 58595 AACAAAGATTTGCAT 58581 >seq25260 Length=154358 Score = 82.4 bits (90), Expect = 9e-11 Identities = 66/79 (84%), Gaps = 2/79 (3%) Strand=Plus/Plus Query 60055 TGAAAAATTTTCTCCTCG--GCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 60112 ||||||| ||| | || || ||| ||||||||| |||| |||||||||||||||| Sbjct 98904 TGAAAAAGATTCACGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGA 98963 Query 60113 ATACTCACCACTATACTAC 60131 ||||||||||||||||||| Sbjct 98964 ATACTCACCACTATACTAC 98982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571633453289640