Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq25310 93.3 6e-14 seq25706 91.5 2e-13 seq25753 89.7 8e-13 seq25634 86.0 9e-12 >seq25310 Length=177726 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 || ||||| | ||| |||||||| ||||||||||||| ||| || |||| ||| || Sbjct 154728 ACTAAATGAAGAGTTGATTCTTTCTGAATATTATAATCTGCAAGCGTCCTGCCATCTTCG 154787 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | ||||||||| || || |||| | || ||||| ||||| || ||||| |||||||| Sbjct 154788 AGTTGTTTTCCGGCGAAGATCAGACGCTGTTGATCAGGAGGGATGCCTTCCTTATCTTG 154846 >seq25706 Length=1095516 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 146080 AGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCC 146139 |||||| ||||| ||||||||||| | | || || | ||| || | ||| || || Sbjct 698952 AGTAGACTCTTTCTGGATATTATAATCAGCCAAGGTCCTTCCATCTTCAAGTTGCTTCCC 699011 Query 146140 AGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||||||||||||| |||||||| |||||||| ||||| ||||| || Sbjct 699012 AGCAAAAATCAATCTCTGCTGATCAGGAGGAATCCCTTCCTTATCCTG 699059 >seq25753 Length=2347473 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| |||| ||| || || || | ||| | || || || || || ||||| || Sbjct 490167 GTTCCTCCTCGAAGCCTCAAAACAAGATGAAGTGTGGACTCCTTCTGGATGTTATAGTCA 490226 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | |||||| | | ||| || | ||| || |||||||| |||||||||||||| || ||| Sbjct 490227 GCAAGAGTACGCCCATCCTCCAGTTGCTTACCAGCAAATATCAATCTTTGCTGGTCTGGA 490286 Query 146168 GGAATTCCTTCTTTATC 146184 ||||| ||||| ||||| Sbjct 490287 GGAATCCCTTCCTTATC 490303 >seq25634 Length=602113 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || | ||||| | ||||| || | ||||| ||||| ||||||||||| | | Sbjct 348776 CCGCCACGAAGTCGGAGCACCAAGTGGAGTGTAGACTCTTTTTGAATATTATAATCAGCA 348717 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || | ||||| |||||||| ||||| || |||||||| || ||| Sbjct 348716 AGAGTGCGTCCATCCTCGAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGATCTGGGGGA 348657 Query 146171 ATTCCTTCTTTATCTTG 146187 || || || || ||||| Sbjct 348656 ATACCCTCCTTGTCTTG 348640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743286956616960