Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq25744 125 5e-24 seq25310 104 2e-17 seq25319 96.9 2e-15 seq25573 89.7 3e-13 >seq25744 Length=1702523 Score = 125 bits (138), Expect = 5e-24 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||||||||| || |||||| || ||||| ||||||||||| | || |||| |||| Sbjct 948280 CAGCACCAGATGCAAAGTAGACTCCTTCTGGATGTTGTAGTCCGCAAGTGTACGGCCGTC 948221 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 || | ||||| |||||||| || ||||| |||||||| || | || |||||||| Sbjct 948220 TTCGAGTTGCTTTCCTGCGAAGATTAGCCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTC 948161 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | || | | || | ||||| ||||| || || | || ||||| Sbjct 948160 TTGGATCTTGGCCTTCACATTGTCGATGGTATCGGAGGATTCAACCTCTAGGGTTATGGT 948101 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || || |||||||| |||||||||||| Sbjct 948100 CTTACCCGTTAGGGTTTTCACGAAGATCTGCATC 948067 >seq25310 Length=177726 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | ||||| || || | || |||||||| || || || |||| | Sbjct 154254 CCACCGCGAAGACGGAGCACAAGATGGAGGGTGGACTCTTTCTGAATATTATAATCGGCC 154313 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || |||||||| ||||| || || |||| |||||| || || Sbjct 154314 AGAGTACGTCCATCCTCTAACTGCTTCCCTGCAAATATCAGCCTCTGCTGATCAGGTGGA 154373 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||| || ||||| ||| | || | |||| ||| | |||||| Sbjct 154374 ATCCCCTCCTTATCTTGGATCTTGGCCTTCACATTATCAATCGTATCAGAGCTTTCGACC 154433 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || ||||| ||||||||||||||||| |||||||||||||| Sbjct 154434 TCTAGAGTTATGGTCTTGCCGGTGAGAGTTTTTACAAAGATCTGCAT 154480 Score = 93.3 bits (102), Expect = 3e-14 Identities = 164/234 (70%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||||||||| ||||| || || | ||| || ||||| ||||| || |||| Sbjct 166079 CCACCGCGCAGCCTGAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTATAATCGGCG 166138 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || | | || || |||||||| || || || ||||||| |||||| || | ||| Sbjct 166139 AGGGTCCTTCCATCCTCTAACTGCTTCCCAGCAAAGATGAGCCTCTGCTGATCAGGTGGG 166198 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | || ||||| || ||| || ||||| | | | |||| ||| | ||| | Sbjct 166199 ATCCCT-TCCTTATCTTGAATC-TTCGCTTTCACGTTATCAATCGTATCCGAGCTTTCAA 166256 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 | || | || ||||| |||||||| || || |||||||||||||||||| ||| Sbjct 166257 CTTCAAGGGTTATGGTCTTGCCGGTAAGGGTCTTCACAAAGATCTGCATCCCTC 166310 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | || |||||||| | |||| ||| || || ||||| || |||| | Sbjct 166535 CCGCCACGGAGACGGAGGACCAGGTGAAGAGTAGATTCCTTTTGGATGTTATAATCGGCC 166594 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 | |||| |||| || | |||||| || ||||| || | || || ||||| | ||| Sbjct 166595 AAAGTACGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAACCTTTGTTGGTCAGGTGGG 166654 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || || ||||| ||||| ||| | || | || | ||| | || || Sbjct 166655 ATCCCT-TCTTTGTCTTGGATCTTGGCCTTCACATTATCGATGGTATCAGAGCTCTCCAC 166713 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || || ||||| ||||| | |||||| |||||||||||||| Sbjct 166714 CTCCAGAGTAATTGTTTTCCCGGTTAAAGTTTTGACAAAGATCTGCAT 166761 >seq25319 Length=181645 Score = 96.9 bits (106), Expect = 2e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| | || |||| | || |||| ||| ||||| || || Sbjct 58999 TCCTTCTGAATGTTGTAGTCCGCGAGGGTACGGCCATCCTCCAGCTGTTTGCCAGCAAAG 58940 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 ||||||| ||||||||| ||| | | ||||||||| |||| || ||||| | || Sbjct 58939 ATGAGCCTCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGTATC-TTGGCTTTAACATT 58881 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | || | || || || | || || || ||||| |||||||| ||||| Sbjct 58880 GTCAATTGTGTCTGAGCTCTCAACCTCTAAGGTAATAGTCTTGCCAGTGAGAGTCTTCAC 58821 Query 34378 AAAGATCTGCAT 34389 ||| |||||||| Sbjct 58820 AAAAATCTGCAT 58809 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||||| || |||| | || |||| ||| ||||| || || Sbjct 59227 TCCTTCTGAATGTTGTAGTCGGCGAGGGTACGGCCATCCTCCAGCTGTTTGCCAGCAAAG 59168 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||||| ||||||||| ||| | | |||||||| ||||| ||| | || | Sbjct 59167 ATGAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGAATCTTGGCCTTAACATTG 59108 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | || || |||| || || || ||||| ||||| || |||||| Sbjct 59107 TCAATAGTGTCCGAGCTCTCAACTTCCAAGGTAATAGTCTTGCCAGTGAGGGTCTTCACA 59048 Query 34379 AAGATCTGCAT 34389 || || ||||| Sbjct 59047 AAAATTTGCAT 59037 >seq25573 Length=429841 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| |||| | ||||| ||||| | || ||| || || ||||||||||||| Sbjct 359401 CCGCCACGCAAGCGGAGCACAAGGTGGAGGGTTGATTCCTTTTGGATGTTGTAGTCGGCG 359460 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| |||| || | |||||| || ||||| || | || || ||||| ||| Sbjct 359461 AGCGTGCGGCCGTCCTCAAGCTGCTTTCCGGCGAAGATTAAACGTTGTTGGTCCGGGGGT 359520 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| || || ||| | || | | || | || | || || || Sbjct 359521 ATACCTTCCTTGTCTTGGATTTTGGCCTTCACATTGTCGATTGTGTCTGATGACTCTACC 359580 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || || ||||| || || || |||||||||||||||||||| Sbjct 359581 TCTAGGGTTATTGTTTTCCCCGTTAGGGTTTTCACAAAGATCTGCAT 359627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322970559733280