Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq25760 125 7e-24 >seq25760 Length=3792821 Score = 125 bits (138), Expect = 7e-24 Identities = 567/881 (64%), Gaps = 37/881 (4%) Strand=Plus/Plus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 |||||||| | | ||| ||||| || | ||||||||| ||||| ||||| || || ||| Sbjct 707603 GACATAACAGCCGCTTTCTGATACTCTCCAACTCTCTTCTCAAAAAAATTAGTCTTCCCT 707662 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGA-ACA--ATAGTATTTATCG 16045 | ||| ||| ||||| |||||||||||||| || ||| ||| | || || Sbjct 707663 TGTAAACTAATCAGCTCCATCCAATCAAAAGGATTT---GACACATTATACTCCTTGCCG 707719 Query 16046 CATCCCAATTCCAAC-AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATC 16104 || ||||| || | || || || || || ||||| || |||||||| ||||||| || Sbjct 707720 CA-CCCAAGCGCACCCAACAACCTGTCTGCAACAAACTCAATATACTGACTCATTAACTC 707778 Query 16105 ACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATT 16164 | ||||| || | || ||| | || || || ||| | | || || || Sbjct 707779 CCCATTCATCCCCACCAACGCGCAAGGAAGCGCGTCACATACAAACTCCCTCTCGATGTT 707838 Query 16165 AACCGCTTCAATGATTATATCTCTTACTACACT----ATTTAACGGAGGGTTTAATAAGT 16220 ||||| || | ||| || ||| | || | | || ||||| | | Sbjct 707839 CACCGCATCTCGCACTAT-TCCCTTCACGCGCTCCTCACTCAATTTTTTCTTTAACA-GA 707896 Query 16221 GTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGT 16280 | |||| | | ||| || ||||| || || || || || || | |||||||||| Sbjct 707897 CTGTAAA--TCAAACACGCGAAATCGCAGTGTAAGCCCTCATCTCGTGAGATTAACTCGT 707954 Query 16281 TTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATG 16340 |||||||||| ||||| ||||||| || || ||||||| ||||||||| ||| || Sbjct 707955 TTGAAAATGTCAGACCCGGCATTAACCCACGCTTTTTAAGCCAAAATATCGCGCAGAAAC 708014 Query 16341 AACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTC 16400 ||||| ||||| || |||||||| || || |||| | | |||| | | | Sbjct 708015 TTCCAGAGAAGAAAATCCCTTCAACACAAGCGAAAGCAATAATCCTCTCAGCAAAAG--- 708071 Query 16401 TAttttta-ctttctatccattttttagcccaatttgctttttgtttAACACAGTTCATG 16459 ||| | | ||||||||||| |||||| | ||||| | | || | Sbjct 708072 -ATTCCGAGCCGTCTATCCATTTCAAAGCCCACTCCGCTTTCTTCGCTATGCAAGGAACC 708130 Query 16460 TTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATT 16519 |||| || || | ||| ||| || ||||| ||| ||| |||||||| || | Sbjct 708131 GTCTCGATAGCGTGAAACAAACGGTTCTTTTCATTGGAGTCTTTGATATAAGTCTCCAAC 708190 Query 16520 AGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA-AAAGCA 16578 | | | |||||||| || || || ||||| || || || || ||||| || |||||| Sbjct 708191 AAAAGAGAGTACATTTCAGAGTGGATGTTCTCAATAGCGATTTGGAAACCGTAGAAAGCA 708250 Query 16579 TCTAGCTTCGGATATTTGTAC----TTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAA 16634 | || || | | ||| || |||| ||||| | | || | |||||| | Sbjct 708251 -CGCGCCTCAGCCACTTGAACCTCTTTCA---TAAAA-CGGCCGGCGAGGTTTTCAAGGA 708305 Query 16635 CTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTAT 16694 | || || ||| || || || || || || | ||| || || | ||||| || Sbjct 708306 CGATACCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGAGAGATGAAGTGCTTTTC---AT 708362 Query 16695 CTGAA---AGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCC 16751 | | | || | ||||| | | ||||| || | ||| || || ||| | |||| Sbjct 708363 CGGGAGTTAGGGATTCCCAGTGACGGAGATCTTGAGAGAGATCCACTTCCTCTGCCGTCC 708422 Query 16752 AAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCT 16792 |||| || || | || ||||| ||||||| ||| || ||| Sbjct 708423 AAAATGATGCTTCGGCTTTTTTGTACATTTCCCAAATTTCT 708463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462363053791800