Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq25319 129 5e-25 seq25716 100 2e-16 seq25634 98.7 8e-16 >seq25319 Length=181645 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||||||||||||||||||| || |||| | || || Sbjct 59473 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCTAGGGTGCGACCATCTTCA 59414 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || || | || ||||||||| || || | ||||||||||||| | Sbjct 59413 AGCTGCTTCCCAGCAAAGATAAGCCTCTGTTGGTCTGGGGGAATACCCTCCTTGTCCTGA 59354 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || |||||| | | ||||| | ||| || |||| |||||| |||||| Sbjct 59353 ATCTTGGCCTTAACATTGTCAATTGTGTCCGAGCTCTCAACTTCCAAGGTAATAGTCTTG 59294 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||||||||| |||||||| Sbjct 59293 CCAGTGAGGGTCTTCACAAAAATTTGCAT 59265 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| | | | |||||||| || ||| |||||||||||||||||||||| Sbjct 59263 CCACCTCTGAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCG 59204 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || || | || ||||| ||||| || || || || | || ||| ||||| || || Sbjct 59203 AGGGTACGGCCATCCTCCAGCTGTTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGA 59144 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| ||||||||| ||| || |||||| | | ||||| | ||| || Sbjct 59143 ATACCTTCCTTGTCCTGAATCTTGGCCTTAACATTGTCAATAGTGTCCGAGCTCTCAACT 59084 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| |||||| |||||||| || || ||||||||||| |||||||| Sbjct 59083 TCCAAGGTAATAGTCTTGCCAGTGAGGGTCTTCACAAAAATTTGCAT 59037 >seq25716 Length=1210045 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || || ||| || ||||| || ||||| ||| ||| | || || Sbjct 962539 ACCAAATGAAGGGTAGACTCTTTTTGAATATTATAGTCAGCAAGTGTACGACCATCCTCT 962480 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || |||||||||| || ||| || || || || | ||| || |||||| | Sbjct 962479 AGCTGCTTGCCAGCGAATATCAGCCTCTGCTGATCAGGTGGAATACCTTCTTTGTCCTGA 962420 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| || ||| ||||||| ||||| |||||| Sbjct 962419 ATCTTAGCCTTGACATTGTCAATGGTGTCTGAACTCTCAACCTCCAGTGTAATTGTCTTG 962360 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || || |||||||||||||||||| Sbjct 962359 CCAGTGAGGGTTTTCACAAAGATTTGCATG 962330 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||| ||| |||||||| || |||||||| || ||| | || ||| Sbjct 962767 ACCAAGTGCAAAGTGGATTCCTTCTGGATATTGTAGTCAGCAAGGGTGCGGCCATCCTCC 962708 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| || ||| ||||| || || | || ||||||||| | Sbjct 962707 AGCTGCTTACCCGCAAAGATCAGCCTCTGCTGGTCTGGTGGTATCCCTTCCTTGTCCTGA 962648 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | ||| | ||| ||||||| ||| || |||||| Sbjct 962647 ATCTTGGCCTTGACATTGTCTATGGTATCCGAGCTCTCAACCTCCAGGGTGATTGTCTTG 962588 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || || || ||||||||||||||| Sbjct 962587 CCAGTGAGGGTTTTTACAAAGATTTGCATG 962558 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 || || || || || || || || ||||||| ||| || || || || | || |||||| Sbjct 963169 TCCTCAAGCTGCTTCCCAGCAAAAATCAACCTCTGCTGATCTGGTGGGATGCCTTCCTTG 963110 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301 || ||||||| ||| || | || | || || ||||||||||| ||| || Sbjct 963109 TCTTGAATTTTTGCCTTCACATTGTCAACAGTATCTGAACTCTCCACCTCCAAGGTTATA 963050 Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||| || || || |||||||||||||| |||||| Sbjct 963049 GTCTTCCCTGTAAGGGTCTTCACAAAGATCTGCATG 963014 >seq25634 Length=602113 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| |||||||||||||| |||||| ||| || | || || Sbjct 348986 ACCAAGTGGAGGGTGGATTCCTTCTGAATGTTATAGTCGGCAAGTGTTCGCCCATCCTCA 348927 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || || | || ||| || || || || | || |||||||| Sbjct 348926 AGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGGATCCCTTCCTTGTCTTGG 348867 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | || || ||||||||||| ||||| |||||| Sbjct 348866 ATCTTGGCCTTGACATTGTCAATGGTATCAGAACTCTCCACCTCCAAAGTAATAGTCTTG 348807 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || |||||||||||||||||||| Sbjct 348806 CCGGTGAGGGTCTTCACAAAGATTTGCAT 348778 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||| || ||||| || || || || ||| | || || Sbjct 348758 ACCAAGTGGAGTGTAGACTCTTTTTGAATATTATAATCAGCAAGAGTGCGTCCATCCTCG 348699 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| || || || ||||||| ||| || || || || | |||||||||||| | Sbjct 348698 AGCTGTTTCCCAGCAAAGATCAACCTCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGA 348639 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||||| | | |||| || ||| || |||| ||| || |||||| Sbjct 348638 ATTTTGGCTTTAACATTGTCAATAGTGTCTGAACTCTCAACTTCCAAGGTGATAGTCTTG 348579 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||| |||||||| ||||| Sbjct 348578 CCAGTAAGGGTCTTTACAAAGATCTGCAT 348550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394951151696023