Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq25706 104 2e-17 seq25319 86.0 5e-12 seq25310 84.2 2e-11 >seq25706 Length=1095516 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | ||| || | |||||||||||||||||| || || || || || ||| Sbjct 699379 CCTCCACGGAGACGAAGCACAAGGTGAAGTGTTGATTCTTTCTGGATATTATAATCAGCC 699438 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||| | ||||| || ||| |||| || ||||| ||||| ||| Sbjct 699439 AAAGTACGCCCATCTTCAAGCTGTTTTCCAGCAAAGATTAGCCTTTGCTGATCTGGGGGA 699498 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||| || || ||| | | |||||| | ||| |||||| | | ||| | Sbjct 699499 ATTCCTTCTTTGTCCTGAATCTTTGCCTTGACATTATCAATAGTGTCGCTGCTCTCAACT 699558 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| || ||| | || || ||||| ||||| || || || ||||| Sbjct 699559 TCAAGAGTAATGGTCTTTCCCGTCAAGGTTTTGACGAAGATCTGCAT 699605 >seq25319 Length=181645 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| |||||| || || || || ||||||||||||||||| | || | ||| Sbjct 59248 AGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTACGGCCATCC 59189 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| |||||||| ||| |||| || || || || || ||| | |||||||| || Sbjct 59188 TCCAGCTGTTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCC 59129 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||| | ||| || | ||| |||||| | ||| ||| | ||| || | Sbjct 59128 TGAATCTTGGCCTTAACATTGTCAATAGTGTCCGAGCTCTCAACTTCCAAGGTAATAGTC 59069 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || | || || |||||||||||||| Sbjct 59068 TTGCCAGTGAGGGTCTTCACAAAAATTTGCAT 59037 >seq25310 Length=177726 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| | || || || | ||||| ||||||||||| ||||| || || || || Sbjct 154710 CCTCCCCTCAATCGGAGAACTAAATGAAGAGTTGATTCTTTCTGAATATTATAATCTGCA 154769 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | | |||||| | |||||| || || |||| || | |||||||| || Sbjct 154770 AGCGTCCTGCCATCTTCGAGTTGTTTTCCGGCGAAGATCAGACGCTGTTGATCAGGAGGG 154829 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||||||| || | | || || || | ||| ||||| | |||| Sbjct 154830 ATGCCTTCCTTATCTTGGATCT-TGGCTTTTACGTTATCAATTGTGTCGGAGCTCTCGAC 154888 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| || ||| | |||||||| | ||||| ||||| |||||||| Sbjct 154889 CTCAAGAGTTATGGTCTTGCCGGTGAGGGTTTTGACAAAGATTTGCAT 154936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379224891081435