Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq25760 194 1e-44 seq25310 105 6e-18 seq25706 95.1 1e-14 seq25634 93.3 4e-14 seq25319 89.7 5e-13 seq25744 82.4 7e-11 >seq25760 Length=3792821 Score = 194 bits (214), Expect = 1e-44 Identities = 397/583 (68%), Gaps = 13/583 (2%) Strand=Plus/Minus Query 57546 ATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTT 57605 ||||| || || |||| ||||| |||||| | ||||||||||| || |||||||| ||| Sbjct 708483 ATGTTCCCAATCCAATACCCAGAAATTTGGGAAATGTACAAAAAAGCCGAAGCATCATTT 708424 Query 57606 TGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAA 57665 ||||| | || ||||| || || ||| | ||||| | | ||||| ||||| | Sbjct 708423 TGGACGGCAGAGGAAGTGGATCTCTCTCAAGATCTCCGTCACTGGGAATCCCTAACTCCC 708364 Query 57666 TCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTT 57725 ||| | | || || ||||| | || || |||||||| ||||| ||||| || Sbjct 708363 GATGAAAAGCACTTCATCTCTCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGTATCGTC 708304 Query 57726 AACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTT 57785 || || | | || | ||| |||| || |||||| | |||||| | |||||| Sbjct 708303 CTTGAAAACCTCGCCGGCCGTTTTATGAAAGAGGTTCAAGTGGCTGAGGCGCG-TGCTTT 708245 Query 57786 -TACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGA 57844 ||||| || ||| | || ||||| ||| | || || |||||||| || || | | || Sbjct 708244 CTACGGTTTCCAAATCGCTATTGAGAACATCCACTCTGAAATGTACTCTCTTTTGTTGGA 708185 Query 57845 TACGTACGTGAAGGA---CAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAAT 57901 || || | || || ||| || |||| ||| |||| |||| ||||| || | Sbjct 708184 GACTTATATCAAAGACTCCAATGAAAAGAACCGT---TTGTTTCACGCTATCGAGACGGT 708128 Query 57902 GCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCAC 57961 || || || ||||| || |||||| | | ||||||||| | || | ||| | Sbjct 708127 TCCTTGCATAGCGAAGAAAGCGGAGTGGGCTTTGAAATGGATAGA---CGGCTCGGAATC 708071 Query 57962 GTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT 58021 || || |||||| | || || ||||| || ||||| || ||||| || || || || Sbjct 708070 TTTTGCTGAGAGGATTATTGCTTTCGCTTGTGTTGAAGGGATTTTCTTCTCTGGAAGTTT 708011 Query 58022 -TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACG 58080 ||| || ||||||||| | || || || || | ||||| || ||||| ||| |||| Sbjct 708010 CTGC-GCGATATTTTGGCTTAAAAAGCGTGGGTTAATGCCGGGTCTGACATTTTCAAACG 707952 Query 58081 AGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTG 58123 |||| || || || || ||||| | || ||||| ||||| Sbjct 707951 AGTTAATCTCACGAGATGAGGGCTTACACTGCGATTTCGCGTG 707909 >seq25310 Length=177726 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || ||||||||||| ||||| || || || |||| || || || Sbjct 154709 CATGCAAATCTTTGTGAAGACTCTGACGGGCAAGACCATAACTCTCGAGGTGGAGAGCTC 154650 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| | || || |||||||| | ||||| || || Sbjct 154649 TGACACGATCGATAACGTCAAGGCCAAGATCCAAGATAAGGAAGGTATCCCGCCTGATCA 154590 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | ||||| ||||| || || ||| | || || | ||| | |||||||| Sbjct 154589 GCAGAGGCTAATCTTCGCCGGAAAGCAGCTCGAGGATGGAAGGACGCTTGCTGATTATAA 154530 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| |||||||| || || ||||||||||| || || |||| || || Sbjct 154529 CATCCAAAAAGAGTCAACCCTTCATCTGGTTCTCCGATTGAGAGGGGG 154482 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| || || ||||| || || || | || || || ||| Sbjct 166533 ATGCAAATCTTTGTCAAGACCCTCACCGGCAAGACCATAACTCTTGAGGTCGAGAGCTCC 166474 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || ||| | || |||||||||||| | || || || || Sbjct 166473 GACACAATTGATAACGTAAAAGCCAAGATCCAAGACAAGGAAGGCATCCCTCCTGATCAA 166414 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| || ||||| | ||||| | ||| | ||||||||| Sbjct 166413 CAGCGTCTGATCTTCGCCGGAAAACAACTCGAAGATGGCAGGACCCTTGCAGATTATAAC 166354 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || ||||| |||||||| || ||| | |||| || || Sbjct 166353 ATTCAGAAGGAGTCGACCCTTCATCTAGTTCTTCGGTTGAGAGGAGG 166307 >seq25706 Length=1095516 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| || || || ||||| || || ||||| | || || || | Sbjct 699833 ATGCAGATTTTCGTGAAAACCCTCACAGGAAAGACCATCACTCTGGAGGTGGAGAGCAGC 699774 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || ||| | ||| ||||||||||| | || || |||||| Sbjct 699773 GACACAATAGACAACGTGAAAGCCAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAG 699714 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || ||||| || |||||| | |||||| || | |||||||||| Sbjct 699713 CAACGTCTCATCTTCGCAGGAAAACAGCTCGAAGACGGCCGCACCTTAGCCGATTATAAC 699654 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||||||||||| || || || || || || Sbjct 699653 ATTCAAAAAGAATCAACCCTCCACCTTGTCCT 699622 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA--CCGT 31250 ||||||||||| || ||||| |||| || || || || ||| | || || ||| | || Sbjct 699377 ATGCAAATTTTTGTTAAGACCTTGACGGGAAAGACCATTACCTTGGAGGTAGAAAGCAGT 699318 Query 31251 CCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| |||| | ||||| || || ||||| ||||| | || || || | Sbjct 699317 --GACACAATCGATAATGTCAAGGCGAAGATTCAAGACAAAGAAGGGATTCCACCAGATC 699260 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 ||||| | | || ||||| || || ||| | ||||| | |||| || ||||||| Sbjct 699259 AGCAGAGGTTGATTTTCGCAGGAAAGCAGCTTGAAGATGGAAGGACTTTGGCTGATTATA 699200 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||||| || ||||| || ||||| || || Sbjct 699199 ACATTCAGAAGGAATCAACACTTCACCTTGT 699169 >seq25634 Length=602113 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || || || || ||||| || |||||| | || || ||| || Sbjct 348322 ATGCAAATTTTCGTGAAAACCCTAACTGGCAAGACTATCACCCTTGAGGTAGAAAGCTCA 348381 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | || ||| | || |||||||| || | || || |||||| Sbjct 348382 GACACTATTGACAATGTAAAAGCTAAGATTCAAGACAAGGAGGGTATTCCCCCGGACCAG 348441 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || | || || || |||||||| ||| | || || | | | || | |||||||| Sbjct 348442 CAAAGACTGATTTTTGCTGGCAAGCAGCTTGAGGA-TGGACGCACCCTTGCTGATTATAA 348500 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| ||||| ||||| ||||| || |||| || || | ||||| |||| Sbjct 348501 CATCCAAAAGGAATCAACTCTCCACTTGGTGCTCCGATTAAGGGGTGGTA 348550 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || |||||||| || || ||||| || |||||| | || ||||| || Sbjct 348550 ATGCAGATCTTTGTAAAGACCCTTACTGGCAAGACTATCACCTTGGAAGTTGAGAGTTCA 348609 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | || ||| | ||| |||||||| || | || || || ||| Sbjct 348610 GACACTATTGACAATGTTAAAGCCAAAATTCAAGACAAGGAGGGTATTCCCCCAGATCAG 348669 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 ||| | | || || ||||| |||||| | || || | | | ||| | |||||||| Sbjct 348670 CAGAGGTTGATCTTTGCTGGGAAACAGCTCGAGGA-TGGACGCACTCTTGCTGATTATAA 348728 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||||||| || || || || |||| || |||| | ||||||| Sbjct 348729 TATTCAAAAAGAGTCTACACTCCACTTGGTGCTCCGACTTCGTGGCGGTA 348778 >seq25319 Length=181645 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| || || ||||| || || ||| | || ||||| || Sbjct 59037 ATGCAAATTTTTGTGAAGACCCTCACTGGCAAGACTATTACCTTGGAAGTTGAGAGCTCG 59096 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | || || | || |||||||||||| | || || |||||| Sbjct 59097 GACACTATTGACAATGTTAAGGCCAAGATTCAGGACAAGGAAGGTATTCCCCCAGACCAG 59156 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || |||||||||||| |||| || || | ||| || ||| Sbjct 59157 CAGAGGCTCATCTTTGCTGGCAAACAGCTGGAGGATGGCCGTACCCTCGCCGACTACAAC 59216 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || || ||||| |||| || | || || || |||| Sbjct 59217 ATTCAGAAGGAGTCCACCCTTCACTTGGTCCTCCGTCTCAGAGGTGGTA 59265 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || |||||||| || ||||| || || ||| | || ||||| || Sbjct 58809 ATGCAGATTTTTGTGAAGACTCTCACTGGCAAGACTATTACCTTAGAGGTTGAGAGCTCA 58868 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || ||| | ||| ||||||||| || | || || |||||| Sbjct 58869 GACACAATTGACAATGTTAAAGCCAAGATACAGGACAAGGAGGGAATCCCCCCAGACCAG 58928 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || |||||||||||| |||| || || | || || ||| Sbjct 58929 CAGAGGCTCATCTTTGCTGGCAAACAGCTGGAGGATGGCCGTACCCTCGCGGACTACAAC 58988 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || || ||||| |||| || | || || || |||| Sbjct 58989 ATTCAGAAGGAGTCCACCCTTCACTTGGTCCTCCGTCTTAGAGGTGGTA 59037 >seq25744 Length=1702523 Score = 82.4 bits (90), Expect = 7e-11 Identities = 160/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || ||||| || || || || || || || || ||| | || |||||| | Sbjct 948064 AAAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATAACCCTAGAGGTTGAATC 948123 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||| | |||| | || || | || |||||||||||| | || || || Sbjct 948124 CTCCGATACCATCGACAATGTGAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCGGA 948183 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC--TCTATGACTATGAGCGAT 31366 |||||| || ||||| ||||| || || || | |||||| | ||| || | || Sbjct 948184 CCAGCAACGGCTAATCTTCGCAGGAAAGCAACTCGAAGACGGCCGTACACT-TGCG-GAC 948241 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| || || || || ||| | |||||||| || || |||| || || Sbjct 948242 TACAACATCCAGAAGGAGTCTACTTTGCATCTGGTGCTGCGATTGAGAGGAGG 948294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445622846502960