Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_003157.5 Length=43106 Score E Sequences producing significant alignments: (Bits) Value seq20225 556 4e-154 >seq20225 Length=1569 Score = 556 bits (616), Expect = 4e-154 Identities = 554/714 (78%), Gaps = 23/714 (3%) Strand=Plus/Minus Query 7476 AGGAGAAGCATTGGACAAAAAAGAACTGTTTGATAATTTCCAA--AATAATTGGATGCGT 7533 ||||| ||| ||||| ||||| | || ||||| ||||||||| || ||||| || Sbjct 702 AGGAGGAGCTATGGACGAAAAAAAGCTTTTTGAAAATTTCCAATTAACTTTTGGA--CGG 645 Query 7534 CTCTTATCACCATTTGAGATTGAAGACATTAATAAGTGGATTGACGAAGAGAAGATGCCT 7593 | |||| |||||||| || ||||| ||| | ||||||||| ||||||| || ||||| Sbjct 644 ATGATATCGCCATTTGAAATCGAAGATATTCAAAAGTGGATTCACGAAGATAACATGCCA 585 Query 7594 GTTGAAGTTGTTAACGAGGCACTAAAATCGACAATTCTATACAACGCACCAAACC--TTA 7651 |||||||||| ||| || ||| | || | || | ||| || ||| | || Sbjct 584 ATTGAAGTTGTCAACCTTGCCTTAAGA--GA-AGCGGTAGAAAACA-ACAAAATCAGTTG 529 Query 7652 GA--TACTTAAACAGAGTCTTGAACAACTGGAAGCGACAAGGGATTGATACAGTCGAGAA 7709 || || | || | | |||| | ||| | | || | ||||| || || Sbjct 528 GAAGTATATCAATAAAATCTTAGTTGATTGGTATAAATCTGGAGATACGACAGTAGAAAA 469 Query 7710 AGTCGAATTTGCTAGGTTGCAA---TTTGAAAATAA-AAAGCTCAGTCAAAATAAAAATC 7765 ||| | | ||||||||| ||||| ||| ||| || | || | || | Sbjct 468 GGTCAGA---GACAGGTTGCAACGGTTTGACGATAGTAAAAAACAA-CGAAGTGTAACT- 414 Query 7766 ATCAATCCAACGTCCCAAGCTGGTCGAATCCAGACTACAAAGAACCAGATTTAAAAGAAT 7825 | | || |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 413 ACC--TCAAACGTCCCAAGCTGGTCGAATCCAGACTACAAAGAACCAGATTTAAAAGAAT 356 Query 7826 TTGCACTAGGAAGCATAGACGGTATAGAAGATGGATCAGGAGATTNNNNNNNNNNNNNNN 7885 |||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 355 TTGCTCTAGGAAGCATGGACGGTATAGAAGATGGATCAGGAGATTTTTAATTTTTTTAAC 296 Query 7886 NNNNNNNNNNNNNNNGATTTTGGTAAAACGGCGAGTAAAGAGACTTTTGCTAAGTTTGCT 7945 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 295 AAACAAATCAAAAAAGATTTTGGTAAAACGGCGAGTAAAGAGACTTTTGCTAAGTTTGCT 236 Query 7946 AGTTACTGCGCCGAAGGAATCGaaaaaaaaGGAGTTAAGCCAATTTTTAATTGGATAAAC 8005 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 235 AGTTACTGCGCCGAAGGAATCGAAAAAAATGGAGTTAAGCCAATTTTTAATTGGATAAAC 176 Query 8006 CTATACGCATTCGGCCTTGGAATAACAACGGCAGAAGCAGACCGATTGAGAATAGAGCGA 8065 |||||||| || || ||| || ||||| |||||||||||||| ||||||||||||||| Sbjct 175 CTATACGCTTTTGGAACTGGTATGACAACAGCAGAAGCAGACCGGTTGAGAATAGAGCGA 116 Query 8066 TATAAACAGGAGAATGCGTTATGACAAAACAACATAGAGAGACGCTTATCTGGTACCGAG 8125 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 115 TATAAACAGGAGAATGCGTTATGACAAAACAACATAGAGAAACGCTTATCTGGTACCGAG 56 Query 8126 CAAGCCATCAAGAGCGTGAGAGATTGCTTGATTTCGGGTTAGTTGATAAATCAC 8179 |||| ||||||||||||||||||||||||||||| || ||||||||||| ||| Sbjct 55 CAAGTCATCAAGAGCGTGAGAGATTGCTTGATTTTGGACTAGTTGATAAAGCAC 2 Score = 307 bits (340), Expect = 3e-79 Identities = 280/353 (79%), Gaps = 0/353 (0%) Strand=Plus/Minus Query 6793 AGGAGCGTAACATGAACAAATTAGAACTATTTTTATTAACAACAACGATTATCTTAGCAA 6852 ||||| ||||||||||||||||||| ||||||| ||| ||||||| |||||||||| Sbjct 1392 AGGAGTATAACATGAACAAATTAGAATTATTTTTGTTAGCAACAACCGTTATCTTAGCGG 1333 Query 6853 TCATTGCAAGAATTCAGTATGAAGTCATaaaaaaaCATAATTCACCAGAGAATAAGCGAA 6912 ||||||| || | || | |||||||| |||||||| ||||| |||||||||||||| | Sbjct 1332 TCATTGCTAGGGTGCAACACGAAGTCATTAAAAAACACAATTCGCCAGAGAATAAGCGGA 1273 Query 6913 GAATTTTTAGGGAAGTAGCTTTAGAAAACAGCAAAGGATGGAGCGAGAAGCGCTCTAGAG 6972 |||||||||||||||||||||| |||||||||||||||||||| ||||||| | |||| Sbjct 1272 AAATTTTTAGGGAAGTAGCTTTAAAAAACAGCAAAGGATGGAGCAAGAAGCGTGCAAGAG 1213 Query 6973 GAGAGGTGGTCAGCTGATGCAGTACATTTTTCAAGACGCTACGAGGTAATTTTACTAGTG 7032 ||| ||| ||||||| ||||||||||||||||||||| || ||||| || || || Sbjct 1212 GAGGGGTTGTCAGCTAATGCAGTACATTTTTCAAGACATTAACAGGTAGTTACACAGCTG 1153 Query 7033 TTAGTAATGAGTTTATTGATGATAAAGAACTATCTTATAAATCCGTTGGATTGCTATTGA 7092 |||| ||||| |||||| | || |||||||| | |||| ||| |||| | | Sbjct 1152 TTAGCAATGAATTTATTCAGGACAAAGAACTTTTCAATAAGGAAAAAGGACTGCTGCTAA 1093 Query 7093 CCATCCTAAGAAATAAAGATGAGTGGCGAGTATACCCAGAAGAGCTTGCTAGA 7145 |||| | || ||| ||| || ||| |||| || || ||||| || |||||| Sbjct 1092 CCATTTTGAGTAATGCAGACGAATGGAGAGTCTATCCTGAAGAACTCGCTAGA 1040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137775436686408