Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq24064 145 3e-30 seq24175 109 2e-19 seq7934 104 8e-18 >seq24064 Length=8313 Score = 145 bits (160), Expect = 3e-30 Identities = 189/260 (73%), Gaps = 6/260 (2%) Strand=Plus/Plus Query 33402 GCCTCAGCTTCAGCGGGCGGGATATAGCCGAGCGGTTCCATCAGCCGATGATGGTTGTAC 33461 || || || || ||||| || || | ||||| || | | ||||||| ||| |||| || Sbjct 6974 GCTTCTGCCTCGGCGGGTGGAATGTCGCCGATGGGGCCGAGCAGCCGACGATTGTTGAAC 7033 Query 33462 CAGGCGACCCATTCCAGCGTTGCCAGTTCGACGGATTCCCTCGTTTT---CCAAGGGGCG 33518 | | | |||||||| ||||| |||| ||| |||| || || || ||| || | Sbjct 7034 CGGTCCACCCATTCGAGCGTCGCCATTTCAACGG---CCTGCGAGTTGCGCCACGGACCA 7090 Query 33519 CGCCGATGAATCAGTTCCGTCTTGTACAGGCCGTTGATCGTTTCGGCCAGCGCATTGTCG 33578 | ||||| || | ||| |||||||| ||||||||||||||| ||||| || || ||| Sbjct 7091 AGACGATGGATTACTTCTACCTTGTACAAGCCGTTGATCGTTTCAGCCAGTGCGTTATCG 7150 Query 33579 TAGCTGTCGCCCCGGCTGCCGACTGAGGGCTCGATGCCGGCCTCAGCCAGCCGTTCGCTG 33638 | | ||| ||| |||||| ||||||||||||||||| || || ||||||| || | Sbjct 7151 TGGGAGTCACCCACGCTGCCCACTGAGGGCTCGATGCCAGCGTCGACCAGCCGATCCGTA 7210 Query 33639 TAGCGAATGCTGACGTATTG 33658 ||||||| |||||||| Sbjct 7211 TAGCGAACCGATACGTATTG 7230 >seq24175 Length=9337 Score = 109 bits (120), Expect = 2e-19 Identities = 238/354 (67%), Gaps = 38/354 (11%) Strand=Plus/Plus Query 31334 CGGTGCCCACTCGCCCCATTGCTTGAATAGGAACGGCACGCCGGCGGCTGCGCACTGGTC 31393 ||| ||||| || |||||||||||||| | | | || ||||| || ||||||||||| Sbjct 985 CGGCGCCCATTCTCCCCATTGCTTGAAGTGATAGGCAACCCCGGCTGCGGCGCACTGGTC 1044 Query 31394 GCGCAGCGAGCGAGCCCAGTCGGGATGCATCGGGCGGGCGCCGTGGCCGCTTTCGCCGCC 31453 ||||||||| | |||||| |||||||| ||||| ||||| ||||||| || ||||| Sbjct 1045 GCGCAGCGATCTCGCCCAGGATGGATGCATTGGGCGCGCGCCCCGGCCGCTCTCACCGCC 1104 Query 31454 GGCGATCACCCAATGTAGGCCGCCGTCGGCTG-GCCGGCGTAGTTCGAGCTGGCGCTTGC 31512 ||| | || | | | |||| | ||| || |||||| | | |||| | Sbjct 1105 AACGAAGA-----TGCCGTCGATCATCGGGGGAGCCTGC--AGTTCGG--TAG-GCTTAC 1154 Query 31513 CGCCGTGCGTACGAAAATTGCCGGTGGGCTCGCTGTAGATGTGGAAGCGAAGGTCAACCG 31572 | | | | ||| || || | || | | || | | Sbjct 1155 CCCAAGG-----GCCAAT--CCAGTCG--------TACAGGCTGACG------------G 1187 Query 31573 GCCCGAGCAAAGGCTCCATCGACAGGAAGCGCACGCGAGCGGGCACTGCGAGCAGCTTCG 31632 |||||||||||||||||||||| |||||||| || | |||| | || |||||| Sbjct 1188 GCCCGAGCAAAGGCTCCATCGAGAGGAAGCGGGTGCCAACGGGAGCGTTGATCAGCTTGT 1247 Query 31633 GAATGTCGCGGTCGGCCTCGGCCTGATTCACGATCGTCGCGCCGAGCCAGACAT 31686 ||| || |||||||| || | ||| || |||||||||||||||||||| |||| Sbjct 1248 CAATATCCCGGTCGGCTTCAGTCTGGTTGACGATCGTCGCGCCGAGCCACACAT 1301 >seq7934 Length=986 Score = 104 bits (114), Expect = 8e-18 Identities = 97/121 (80%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 31339 CCCACTCGCCCCATTGCTTGAATAGGAACGGC-ACGCCGGCGGCTGCGCACTGGTCGCGC 31397 |||||||||||||||||||||| | ||| ||| | || || || || || || ||||| Sbjct 216 CCCACTCGCCCCATTGCTTGAA-ATGAAAGGCGATACCAGCTGCCGCACATTGATCGCGT 158 Query 31398 AGCGAGCGAGCCCAGTCGGGATGCATCGGGCGGGCGCCGTGGCCGCTTTCGCCGCCGGCG 31457 ||||| || ||||| |||||||| ||||| |||||| |||||||||| |||||| || Sbjct 157 AGCGATCGCGCCCACGATGGATGCATTGGGCGCGCGCCGCGGCCGCTTTCACCGCCGACG 98 Query 31458 A 31458 | Sbjct 97 A 97 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170619785355010