Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq25760 262 5e-65 seq24687 96.9 4e-15 seq25599 86.0 8e-12 >seq25760 Length=3792821 Score = 262 bits (290), Expect = 5e-65 Identities = 431/620 (70%), Gaps = 6/620 (1%) Strand=Plus/Plus Query 33576 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAAC 33635 |||||||| |||||||||||||| | ||||| |||| ||||| ||||| ||||| Sbjct 707903 ATCAAACACGCGAAATCGCAGTGTAAGCCCTCATCTCGTGAGATTAACTCGTTTGAAAAT 707962 Query 33636 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAA 33695 || || || ||||||| ||||||||||||||||||||||| | ||| ||| || Sbjct 707963 GTCAGACCCGGCATTAACCCACGCTTTTTAAGCCAAAATATCGCGCAGAAACTTCCAGAG 708022 Query 33696 AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA---CCGGCGCTG 33752 ||||| || ||||| || ||| || ||||||| ||||| || || | | || | Sbjct 708023 AAGAAAATCCCTTCAACACAAGCGAAAGCAATAATCCTCTCAGCAAAAGATTCCGAGCCG 708082 Query 33753 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 33812 || |||||| || |||||| || || ||||| || ||||| | ||| || || Sbjct 708083 TC---TATCCATTTCAAAGCCCACTCCGCTTTCTTCGCTATGCAAGGAACCGTCTCGATA 708139 Query 33813 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 33872 || | ||| | | ||| |||||||| ||||| | |||||| || | ||||||| Sbjct 708140 GCGTGAAACAAACGGTTCTTTTCATTGGAGTCTTTGATATAAGTCTCCAACAAAAGAGAG 708199 Query 33873 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33932 |||||||| || || ||||| ||||| || || || || ||||||||| | ||||| Sbjct 708200 TACATTTCAGAGTGGATGTTCTCAATAGCGATTTGGAAACCGTAGAAAGCACGCGCCTCA 708259 Query 33933 GTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTG 33992 | | || || ||| | ||| || | || | |||||| || || || || | Sbjct 708260 GCCACTTGAACCTCTTTCATAAAACGGCCGGCGAGGTTTTCAAGGACGATACCGTCGGAG 708319 Query 33993 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 34052 || || || || || | || || || || | ||||| || || ||||| | | Sbjct 708320 GCGGCGAAGAAGGCGAGGACGTGAGAGATGAAGTGCTTTTCATCGGGAGTTAGGGATTCC 708379 Query 34053 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 34112 || | | || ||||| ||| | ||||||||| || | |||||||||||||| || || Sbjct 708380 CAGTGACGGAGATCTTGAGAGAGATCCACTTCCTCTGCCGTCCAAAATGATGCTTCGGCT 708439 Query 34113 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGA 34172 ||||| ||||| | ||| || || | |||||||||||||| ||| |||| | ||| Sbjct 708440 TTTTTGTACATTTCCCAAATTTCTGGGTATTGGATTGGGAACATACAGAATCGGTCTGGG 708499 Query 34173 TTTGGTGCAAGGATAGGTTC 34192 || || || || | ||||| Sbjct 708500 TTGGGAGCGAGAAGGGGTTC 708519 >seq24687 Length=27406 Score = 96.9 bits (106), Expect = 4e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| ||||| | || | || || | ||| | || || |||||||||| |||||| Sbjct 5054 TCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCTTAACATTGGAACAATACC 5113 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 || ||| | ||||| || || ||||||| || ||||||||||||| ||| || Sbjct 5114 ATTAGATGTCCCATTTGTTCCTCGAATATAGCTGCCTGTGGCACGAATATTGTGAATAGA 5173 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | ||| ||||| || || ||| ||| | || || |||| || ||||| || Sbjct 5174 GACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTTAGAGTATCATAAAT 5233 Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644 |||||| || |||||||| ||||| | | ||| |||||| Sbjct 5234 GCCTTCAATACTATCATCTTTCATGCACACCAAAAAGCAGCTA 5276 >seq25599 Length=502261 Score = 86.0 bits (94), Expect = 8e-12 Identities = 156/228 (68%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 63420 TTTCCTCCC---TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63476 ||||||||| ||||| | ||| | ||| |||| |||| | |||| | ||| |||| | Sbjct 182325 TTTCCTCCCCCTTGATCAACGTAGCGAGCAGTGTCATTAAACACTCGAAGCATGGGAACA 182266 Query 63477 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTA 63536 ||||| |||||| ||||| || ||| | ||| | | || | ||||||| ||| Sbjct 182265 ATACCATTTGATTCCCCATTTGTCCCGCAAATAAAACTGCCTGTAGCACGAACGTTATGC 182206 Query 63537 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCA 63596 | || ||||| ||||| || || | || || | || || || || |||||| Sbjct 182205 ACAGAAAGACCAATTCCTCCAGCAACCTTGCTAATAACAGCACACTCCTTCAAAGTGTCA 182146 Query 63597 TAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644 | ||||| || ||||||||||| ||||| ||||| |||||| Sbjct 182145 AATATGCCCTCGATGCTATCATCTTTCATGCACCCAAGAAAGCAGCTA 182098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629614775114640