Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq25760 264 1e-65 seq24687 109 7e-19 seq25599 84.2 3e-11 >seq25760 Length=3792821 Score = 264 bits (292), Expect = 1e-65 Identities = 410/583 (70%), Gaps = 2/583 (0%) Strand=Plus/Plus Query 36152 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 36211 |||||||| |||||||||||||||| ||||| |||| ||||| ||||| ||||| Sbjct 707903 ATCAAACACGCGAAATCGCAGTGTAAGCCCTCATCTCGTGAGATTAACTCGTTTGAAAAT 707962 Query 36212 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGA 36270 || || || ||||||| ||||||||||||||||||||||| | |||| || |||||| Sbjct 707963 GTCAGACCCGGCATTAACCCACGCTTTTTAAGCCAAAATATCG-CGCAGAAACTTCCAGA 708021 Query 36271 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTC 36330 |||||||| ||||| || || || ||||||| ||||| || || | | | Sbjct 708022 GAAGAAAATCCCTTCAACACAAGCGAAAGCAATAATCCTCTCAGCAAAAGATTCCGAGCC 708081 Query 36331 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 36390 | |||||| || |||||| || || ||||| || ||||| | ||||| ||||| Sbjct 708082 GTCTATCCATTTCAAAGCCCACTCCGCTTTCTTCGCTATGCAAGGAACCGTCTCGATAGC 708141 Query 36391 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 36450 | ||| | | ||| |||||||| ||||| | ||| || || | ||||||| || Sbjct 708142 GTGAAACAAACGGTTCTTTTCATTGGAGTCTTTGATATAAGTCTCCAACAAAAGAGAGTA 708201 Query 36451 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 36510 |||||| || || ||||| ||||| || ||||| || ||||||||| | ||||| | Sbjct 708202 CATTTCAGAGTGGATGTTCTCAATAGCGATTTGGAAACCGTAGAAAGCACGCGCCTCAGC 708261 Query 36511 AATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 36570 | || || ||| | ||| || | || | |||||| || || ||||| ||| Sbjct 708262 CACTTGAACCTCTTTCATAAAACGGCCGGCGAGGTTTTCAAGGACGATACCGTCGGAGGC 708321 Query 36571 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCA 36630 || || || || | || || || || | ||||| | || ||||| | ||| Sbjct 708322 GGCGAAGAAGGCGAGGACGTGAGAGATGAAGTGCTTTTCATCGGGAGTTAGGGATTCCCA 708381 Query 36631 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 36690 | | || ||||| ||| | ||||||||| || | |||||||||||||| || || || Sbjct 708382 GTGACGGAGATCTTGAGAGAGATCCACTTCCTCTGCCGTCCAAAATGATGCTTCGGCTTT 708441 Query 36691 TTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 36733 ||| ||||| | ||| || || | ||||| ||||| || ||| Sbjct 708442 TTTGTACATTTCCCAAATTTCTGGGTATTGGATTGGGAACATA 708484 >seq24687 Length=27406 Score = 109 bits (120), Expect = 7e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 |||||| ||||| | || | || || | ||| | || || |||||||||| |||||| Sbjct 5054 TCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCTTAACATTGGAACAATACC 5113 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 ||| ||||| ||||| || || |||||||| || | ||||||||||| ||| || Sbjct 5114 ATTAGATGTCCCATTTGTTCCTCGAATATAGCTGCCTGTGGCACGAATATTGTGAATAGA 5173 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | ||| ||||| || || ||| ||| | || || |||| |||||||| || Sbjct 5174 GACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTTAGAGTATCATAAAT 5233 Query 66395 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 66437 ||| || ||||||||||| ||||| | | ||| |||||| Sbjct 5234 GCCTTCAATACTATCATCTTTCATGCACACCAAAAAGCAGCTA 5276 >seq25599 Length=502261 Score = 84.2 bits (92), Expect = 3e-11 Identities = 116/159 (73%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 65967 AGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCC 66026 |||||||| || || || || || |||||| || |||| |||||| ||||| Sbjct 182829 AGTGTATAATTTC--TCAAATTCTTCACCCCAACAATCAGCCAAACCAGGAGCTTCATTA 182772 Query 66027 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 66086 || || | ||| ||||| || ||| | |||| || ||||||||||||||||||| Sbjct 182771 GGGCAAAACAAAGACCAGCTGCCATCACCTCGGACTCTTTCCATAAAGAGATCAGGAATC 182712 Query 66087 CAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTC 66124 |||||||| ||| || |||||||| | || | |||| || Sbjct 182711 CAAAGAGC-ATAGAACAAATCTCTAGCTCGACGTTCTTC 182674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657960843676920