Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq25310 127 2e-24 seq25706 123 2e-23 seq25319 113 4e-20 seq25634 104 2e-17 seq25716 96.9 3e-15 >seq25310 Length=177726 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || || | ||||| |||| || ||||| || |||||||||||||| Sbjct 166307 CCTCCTCTCAACCGAAGAACTAGATGAAGGGTCGACTCCTTCTGAATGTTATAATCTGCA 166366 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || |||||||| ||||| || || |||||||||| || ||||| ||||| Sbjct 166367 AGGGTCCTGCCATCTTCGAGTTGTTTTCCGGCGAAGATCAGACGCTGTTGATCAGGAGGG 166426 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| ||| || ||||| | || | |||||||| | ||| ||| Sbjct 166427 ATGCCTTCCTTGTCTTGGATCTTGGCTTTTACGTTATCAATTGTGTCGGAGCTCTCGACC 166486 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || | ||||||||||| | || || || || ||||||||| Sbjct 166487 TCAAGAGTTATGGTCTTGCCGGTGAGGGTCTTGACAAAGATTTGCATA 166534 Score = 125 bits (138), Expect = 7e-24 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 || || | |||||| |||| || || ||||| ||||| |||||||| | || || Sbjct 154719 AATCGGAGAACTAAATGAAGAGTTGATTCTTTCTGAATATTATAATCTGCAAGCGTCCTG 154778 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 |||||||| ||||| || || |||||||||| || ||||| ||||| |||||||| Sbjct 154779 CCATCTTCGAGTTGTTTTCCGGCGAAGATCAGACGCTGTTGATCAGGAGGGATGCCTTCC 154838 Query 139667 TTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTC 139726 || || ||| || ||||| | || | |||||||| | ||| ||||||| || Sbjct 154839 TTATCTTGGATCTTGGCTTTTACGTTATCAATTGTGTCGGAGCTCTCGACCTCAAGAGTT 154898 Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | ||||||||||| | ||||| || || ||||||||| Sbjct 154899 ATGGTCTTGCCGGTGAGGGTTTTGACAAAGATTTGCATA 154937 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||| | || | ||||| ||||| || ||||| |||||||||||| | Sbjct 166535 CCGCCACGGAGACGGAGGACCAGGTGAAGAGTAGATTCCTTTTGGATGTTATAATCGGCC 166594 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||||||||| || || || |||||| | ||| || || || || Sbjct 166595 AAAGTACGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAACCTTTGTTGGTCAGGTGGG 166654 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| ||| || || | | || | || || | | ||||||| Sbjct 166655 ATCCCTTCTTTGTCTTGGATCTTGGCCTTCACATTATCGATGGTATCAGAGCTCTCCACC 166714 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || || ||||| || ||||| || || || |||||| Sbjct 166715 TCCAGAGTAATTGTTTTCCCGGTTAAAGTTTTGACAAAGATCTGCATA 166762 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| || || | ||| | |||| || ||||||||||| ||||||||||| Sbjct 154481 GCCCCCTCTCAATCGGAGAACCAGATGAAGGGTTGACTCTTTTTGGATGTTATAATCAGC 154540 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || || || |||||||| || || || |||| || | |||||||| || || Sbjct 154541 AAGCGTCCTTCCATCCTCGAGCTGCTTTCCGGCGAAGATTAGCCTCTGCTGATCAGGCGG 154600 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| || || ||| || || | | || | ||||| | | |||||| Sbjct 154601 GATACCTTCCTTATCTTGGATCTTGGCCTTGACGTTATCGATCGTGTCAGAGCTCTCCAC 154660 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | |||||||| |||| || || || || |||||||| Sbjct 154661 CTCGAGAGTTATGGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 154708 >seq25706 Length=1095516 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||| | || || ||||||||||||||||||||| Sbjct 699606 GCCACCGCGGAGACGGAGGACAAGGTGGAGGGTTGATTCTTTTTGAATGTTATAATCGGC 699665 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||||||||||||||| || || |||| ||||||||||| || || || Sbjct 699666 TAAGGTGCGGCCGTCTTCGAGCTGTTTTCCTGCGAAGATGAGACGTTGCTGGTCTGGTGG 699725 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| |||||| ||| | | || | ||||||| || |||||| Sbjct 699726 GATTCCTTCCTTGTCTTGGATTTTGGCTTTCACGTTGTCTATTGTGTCGCTGCTCTCCAC 699785 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||| || || | ||||| ||||| || ||||| Sbjct 699786 CTCCAGAGTGATGGTCTTTCCTGTGAGGGTTTTCACGAAAATCTGCAT 699833 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || | ||||| || || ||||| || || |||||||| | Sbjct 699379 CCTCCACGGAGACGAAGCACAAGGTGAAGTGTTGATTCTTTCTGGATATTATAATCAGCC 699438 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | | ||||| |||||||| |||||| |||| || | ||||||||| || || Sbjct 699439 AAAGTACGCCCATCTTCAAGCTGTTTTCCAGCAAAGATTAGCCTTTGCTGATCTGGGGGA 699498 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| | |||| || | | || | |||||| || ||| || Sbjct 699499 ATTCCTTCTTTGTC-CTGAATCTTTGCCTTGACATTATCAATAGTGTCGCTGCTCTCAAC 699557 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | ||||| || ||||| ||||| ||||| || ||||| Sbjct 699558 TTCAAGAGTAATGGTCTTTCCCGTCAAGGTTTTGACGAAGATCTGCAT 699605 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || | ||||| ||||||||||| || || |||||||| | Sbjct 698923 CCACCGCGCAGACGCAAGACAAGGTGAAGAGTAGACTCTTTCTGGATATTATAATCAGCC 698982 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| || || || |||||| | |||| | |||||||| ||||| Sbjct 698983 AAGGTCCTTCCATCTTCAAGTTGCTTCCCAGCAAAAATCAATCTCTGCTGATCAGGAGGA 699042 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| || || ||| | || | ||| | | || | || ||| | |||||| Sbjct 699043 ATCCCTTCCTTATC-CTGAATCTTAGCCTTAACATTATCAATAGTATCGCTACTCTCCAC 699101 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||| || ||||| || || || || || ||||| Sbjct 699102 CTCCAAAGTAATAGTCTTTCCAGTCAAAGTCTTAACAAAAATCTGCAT 699149 Score = 82.4 bits (90), Expect = 8e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 139553 AAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCT 139612 || || | ||||| || || || || |||||||||||||| || || || ||| Sbjct 699166 AACACAAGGTGAAGTGTTGATTCCTTCTGAATGTTATAATCAGCCAAAGTCCTTCCATCT 699225 Query 139613 TCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 139672 || ||||| || || || | |||| | |||||||| || || || ||||||||||| Sbjct 699226 TCAAGCTGCTTTCCTGCGAAAATCAACCTCTGCTGATCTGGTGGAATCCCTTCTTTGTC- 699284 Query 139673 GTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731 ||| | || | || | | || | |||||| || || ||||| | ||| | || Sbjct 699285 TTGAATCTTCGCCTTGACATTATCGATTGTGTCACTGCTTTCTACCTCCAAGGTAATGGT 699344 Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 ||| || ||||| || || || || ||||||||| || Sbjct 699345 CTTTCCCGTCAAGGTCTTAACAAAAATTTGCATACCT 699381 >seq25319 Length=181645 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| ||||| | || ||||| |||||||||||||| || | |||| ||||| Sbjct 58790 AACCAAGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGCAAGAGTGCGACCATCTTC 58731 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||||||||| |||||| |||||| | ||| ||||| ||||| || || || ||||| Sbjct 58730 GAGCTGTTTTCCAGCAAAGATCAACCTTTGTTGATCTGGAGGGATCCCCTCCTTGTCTTG 58671 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| ||| ||| | | || | ||||| | | |||||||||| ||| | ||||| Sbjct 58670 GATCTTTGCTTTCACATTGTCGATGGTGTCTGAGCTTTCCACCTCAAGGGTGATGGTCTT 58611 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| || | ||||| || || |||||||| Sbjct 58610 GCCAGTGAGGGTTTTAACAAAGATTTGCAT 58581 >seq25634 Length=602113 Score = 104 bits (114), Expect = 2e-17 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | || | || ||||| | ||||||||||||||||| |||||||| Sbjct 348776 CCGCCACGAAGTCGGAGCACCAAGTGGAGTGTAGACTCTTTTTGAATATTATAATCAGCA 348717 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || | || ||||||||||| |||||| |||||| | |||||||| || || Sbjct 348716 AGAGTGCGTCCA-TCCTCGAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGATCTGGGGG 348658 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCA 139715 || || || ||||| ||| |||| | |||| | | || | ||||| | ||| | Sbjct 348657 AATACCCTCCTTGTC-TTGAATTTTGGCTTTAACATTGTCAATAGTGTCTGAACTCTCAA 348599 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || | ||| | |||||||| || | || ||||| || || |||||| Sbjct 348598 CTTCCAAGGTGATAGTCTTGCCAGTAAGGGTCTTTACAAAGATCTGCATA 348549 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || | ||| || | || ||||| | || || || ||||| ||||||||||| Sbjct 348548 CCACCCCTTAATCGGAGCACCAAGTGGAGAGTTGATTCCTTTTGGATGTTATAATCAGCA 348489 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || | || || ||||| || |||||| | ||||| | |||||| || || || Sbjct 348488 AGGGTGCGTCCA-TCCTCAAGCTGCTTGCCAGCAAAAATCAGTCTTTGCTGGTCCGGGGG 348430 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || || || ||||| ||| | || | ||||| | || | ||||| | | || | Sbjct 348429 AATACCCTCCTTGTC-TTGAATCTTAGCTTTTACATTGTCAATAGTGTCTGAGCTTTCTA 348371 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| ||| | |||||||| || | ||||| ||||| |||||||| Sbjct 348370 CCTCAAGGGTGATAGTCTTGCCAGTTAGGGTTTTCACGAAAATTTGCAT 348322 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || ||||| | || || || || ||||||||||| ||| Sbjct 349005 GCCACCACGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTCTGAATGTTATAGTCGGC 348946 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||| | | || || ||||| ||||||||| |||| || | |||||||| || || Sbjct 348945 AAGTGTTCGCCCATCCTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGG 348886 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || || | | || | || || | |||||| Sbjct 348885 GATCCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTATCAGAACTCTCCAC 348826 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | || | ||||||||||| | || || || || ||||||||| Sbjct 348825 CTCCAAAGTAATAGTCTTGCCGGTGAGGGTCTTCACAAAGATTTGCATA 348777 >seq25716 Length=1210045 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || |||| || | ||| ||||||| |||||||| || ||||| || ||||| Sbjct 962330 GCCACCACGTAGTCGAAGAACCAAGTGAAGAGTAGACTCCTTCTGAATATTGTAATCAGC 962271 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||||| || || ||||||||||||||| ||||||| | || || || || || Sbjct 962270 AAGTGTGCGGCCATCCTCCAGCTGTTTACCAGCAAAGATCAGCCTCTGTTGGTCTGGCGG 962211 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || ||||| || ||| || || | | || | ||||| | | ||||| Sbjct 962210 GATACCCTCTTTATCTTGGATCTTAGCCTTGACATTGTCAATGGTGTCAGAGCTTTCCAC 962151 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | || ||||| || | || |||||||| || ||||| Sbjct 962150 CTCAAGGGTGATAGTTTTGCCAGTTAGTGTCTTTACGAAGATCTGCAT 962103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495904248789600