Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq25760 255 8e-63 seq24687 109 8e-19 seq25599 95.1 2e-14 >seq25760 Length=3792821 Score = 255 bits (282), Expect = 8e-63 Identities = 429/618 (69%), Gaps = 2/618 (0%) Strand=Plus/Plus Query 49954 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 50013 |||||||| |||||||||||||| | ||||| |||| |||| ||||| ||||| Sbjct 707903 ATCAAACACGCGAAATCGCAGTGTAAGCCCTCATCTCGTGAGATTAACTCGTTTGAAAAT 707962 Query 50014 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGA 50072 || || || ||||||| ||||||||||||||||||||||| | |||| || ||||| Sbjct 707963 GTCAGACCCGGCATTAACCCACGCTTTTTAAGCCAAAATATCG-CGCAGAAACTTCCAGA 708021 Query 50073 AAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTC 50132 ||||| || ||||| || || || |||| || ||||| || || | | | Sbjct 708022 GAAGAAAATCCCTTCAACACAAGCGAAAGCAATAATCCTCTCAGCAAAAGATTCCGAGCC 708081 Query 50133 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 | |||||| || |||||| || || ||||| || ||||| | ||| || || || Sbjct 708082 GTCTATCCATTTCAAAGCCCACTCCGCTTTCTTCGCTATGCAAGGAACCGTCTCGATAGC 708141 Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252 | ||| | | ||| |||||||| ||||| | |||||| || | ||||||| || Sbjct 708142 GTGAAACAAACGGTTCTTTTCATTGGAGTCTTTGATATAAGTCTCCAACAAAAGAGAGTA 708201 Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312 |||||| || || ||||| ||||| || || || || ||||||||| | ||||| | Sbjct 708202 CATTTCAGAGTGGATGTTCTCAATAGCGATTTGGAAACCGTAGAAAGCACGCGCCTCAGC 708261 Query 50313 AATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGC 50372 | || || ||| | ||| || | || | |||||| || || ||||| ||| Sbjct 708262 CACTTGAACCTCTTTCATAAAACGGCCGGCGAGGTTTTCAAGGACGATACCGTCGGAGGC 708321 Query 50373 TGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCA 50432 || || || || | || || || || || ||||| | ||| ||||| | ||| Sbjct 708322 GGCGAAGAAGGCGAGGACGTGAGAGATGAAGTGCTTTTCATCGGGAGTTAGGGATTCCCA 708381 Query 50433 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 50492 | | || ||||| ||| | ||| ||||| || | |||||||||||||| || || || Sbjct 708382 GTGACGGAGATCTTGAGAGAGATCCACTTCCTCTGCCGTCCAAAATGATGCTTCGGCTTT 708441 Query 50493 TTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 50552 ||| ||||| | ||| || || | |||||||||||||| ||| |||| | ||| || Sbjct 708442 TTTGTACATTTCCCAAATTTCTGGGTATTGGATTGGGAACATACAGAATCGGTCTGGGTT 708501 Query 50553 TGGTGCAAGGATCGGTTC 50570 || || || | ||||| Sbjct 708502 GGGAGCGAGAAGGGGTTC 708519 >seq24687 Length=27406 Score = 109 bits (120), Expect = 8e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| ||||| | || | || || | ||| | || || |||||||||| |||||| Sbjct 5054 TCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCTTAACATTGGAACAATACC 5113 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| ||||| ||||| || || |||||||| || ||||||||||||| ||| || Sbjct 5114 ATTAGATGTCCCATTTGTTCCTCGAATATAGCTGCCTGTGGCACGAATATTGTGAATAGA 5173 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| ||||| || || ||| ||| | || || |||| |||||||| || Sbjct 5174 GACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTTAGAGTATCATAAAT 5233 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 ||| || || |||||||| ||||| | | ||| |||||| Sbjct 5234 GCCTTCAATACTATCATCTTTCATGCACACCAAAAAGCAGCTA 5276 >seq25599 Length=502261 Score = 95.1 bits (104), Expect = 2e-14 Identities = 158/228 (69%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 80092 TTTCCTCCC---TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 80148 ||||||||| ||||| | ||| | ||| |||| |||| | |||| | ||| |||| | Sbjct 182325 TTTCCTCCCCCTTGATCAACGTAGCGAGCAGTGTCATTAAACACTCGAAGCATGGGAACA 182266 Query 80149 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA 80208 |||||||| ||| ||||| |||||| | ||| | || || | ||||||| ||| Sbjct 182265 ATACCATTTGATTCCCCATTTGTCCCGCAAATAAAACTGCCTGTAGCACGAACGTTATGC 182206 Query 80209 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 80268 | || ||||| ||||| || || | || || | || || || || || ||| Sbjct 182205 ACAGAAAGACCAATTCCTCCAGCAACCTTGCTAATAACAGCACACTCCTTCAAAGTGTCA 182146 Query 80269 TAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 | |||||||| ||||||||||| ||||| ||||| |||||| Sbjct 182145 AATATGCCCTCGATGCTATCATCTTTCATGCACCCAAGAAAGCAGCTA 182098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718037490511320