Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq25760 114 1e-20 >seq25760 Length=3792821 Score = 114 bits (126), Expect = 1e-20 Identities = 383/579 (66%), Gaps = 29/579 (5%) Strand=Plus/Plus Query 13864 AAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAA 13923 |||| |||||||| ||||| || || | ||||||||||| || | |||||||||| Sbjct 707901 AAATCAAACACGCGAAATCGCAGTGTAAGCCCTCATCTCGTGAGATTAACTCGTTTGAAA 707960 Query 13924 ATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA-AATGACCCG 13982 |||| | || ||||| || || || ||||| | ||||||||| || ||| || || Sbjct 707961 ATGTCAGACCCGGCATTAACCCACGCTTTTTAAGCCAAAATATCGC-GCAGAAACTTCCA 708019 Query 13983 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGT-TCTCCAAACGATGCTTT 14041 || ||||| || || ||||| ||| || || | ||||| | || |||| ||| | Sbjct 708020 GAGAAGAAAATCCCTTCAACACAAGCGAAAGC-AATAATCCTCTCAGCAAAAGATTCCGA 708078 Query 14042 TTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTC 14101 || ||||||||| |||||| || | ||| || || || | || || Sbjct 708079 GCCGT---CTATCCATTTCAAAGCCCACTCCGCTTTCTTCGCTATGCAAGGAACCGTCTC 708135 Query 14102 AATAGCATTAAATAAATATTCCTTCTCTTT--AGTACTTGAAAT--GTATGTATCAATAA 14157 ||||| | ||| ||| | ||| || || ||| |||| || || | | ||| || Sbjct 708136 GATAGCGTGAAACAAACGGTTCTTTTCATTGGAGTCTTTGATATAAGTCTCCAACAA-AA 708194 Query 14158 GTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATA-AAAGCAT 14216 | || |||||||||||||| ||||| || ||||| || || ||||| || |||||| Sbjct 708195 GAGAG---TACATTTCAGAGTGGATGTTCTCAATAGCGATTTGGAAACCGTAGAAAGCA- 708250 Query 14217 CTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATA 14276 | || || | | ||| || || ||| | |||| | |||||| || ||| Sbjct 708251 CGCGCCTCAGCCACTTGAACCTCTTTCATAAAACGGCCGGCGAGGTTTTCAAGGACGATA 708310 Query 14277 CCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTG 14336 || || || || || || || | | || || ||| |||| ||||| | | Sbjct 708311 CCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGAGAGATGAAG---TGCTTTTCATCG-GG 708366 Query 14337 AGTT----TTTTCCAAT--CGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAA 14390 |||| || ||| | ||| | ||| | ||| ||||| ||||| || | |||||| Sbjct 708367 AGTTAGGGATTCCCAGTGACGG--AGATCTTGAGAGAGATCCACTTCCTCTGCCGTCCAA 708424 Query 14391 AAACTAGCGACAGCTTTTTTATACATTACCCATATTTCT 14429 || || | |||||||| |||||| |||| |||||| Sbjct 708425 AATGATGCTTCGGCTTTTTTGTACATTTCCCAAATTTCT 708463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479573509594200