Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq25760 118 1e-21 >seq25760 Length=3792821 Score = 118 bits (130), Expect = 1e-21 Identities = 377/576 (65%), Gaps = 23/576 (4%) Strand=Plus/Plus Query 13652 AAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAA 13711 |||| |||||||| ||||| || || | ||||||||||| || | |||||||||| Sbjct 707901 AAATCAAACACGCGAAATCGCAGTGTAAGCCCTCATCTCGTGAGATTAACTCGTTTGAAA 707960 Query 13712 ATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGG 13771 |||| | || ||||| || || || ||||| | ||||||||| || ||| ||| | Sbjct 707961 ATGTCAGACCCGGCATTAACCCACGCTTTTTAAGCCAAAATATCGCGCAGAAACTTCCAG 708020 Query 13772 AAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTT 13831 | ||||| || || ||||| ||| || || || | | || |||| ||| | Sbjct 708021 AGAAGAAAATCCCTTCAACACAAGCGAAAGCAATAATCCTCTCAGCAAAAGATTCCGAGC 708080 Query 13832 TGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGA 13891 || ||||||||| |||||| || | ||| || || || | || |||| Sbjct 708081 CGT---CTATCCATTTCAAAGCCCACTCCGCTTTCTTCGCTATGCAAGGAACCGTCTCGA 708137 Query 13892 TTGCATTGAATAAATGTTCCTTCTCTTT--AGTACTTGAAAT--GTATGTATCAATAAGT 13947 | || | || ||| | | ||| || || ||| |||| || || | | ||| ||| Sbjct 708138 TAGCGTGAAACAAACGGTTCTTTTCATTGGAGTCTTTGATATAAGTCTCCAACAA-AAGA 708196 Query 13948 AAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTA 14007 || |||||||||||||| ||||| || ||||| || || ||||| || ||| | Sbjct 708197 GAG---TACATTTCAGAGTGGATGTTCTCAATAGCGATTTGGAAACCGTAGAAAGCACGC 708253 Query 14008 GCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCA 14067 || || | | ||| ||||| ||| | | || | ||||||| || ||||| Sbjct 708254 GCCTCAGCCACTTGAACCTCTTTCATAAAACGGCCGGCGAGGTTTTCAAGGACGATACCG 708313 Query 14068 TCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGT 14127 || || || || || || | | || || ||| |||| ||||| | |||| Sbjct 708314 TCGGAGGCGGCGAAGAAGGCGAGGACGTGAGAGATGAAG---TGCTTTTCATCG-GGAGT 708369 Query 14128 T----TTTTCCAAT--CGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAA 14181 | || ||| | ||| | ||| | ||| ||||| ||||| || | |||||||| Sbjct 708370 TAGGGATTCCCAGTGACGG--AGATCTTGAGAGAGATCCACTTCCTCTGCCGTCCAAAAT 708427 Query 14182 CTAGCGACAGCTTTTTTATACATTACCCATATTTCT 14217 || | |||||||| |||||| |||| |||||| Sbjct 708428 GATGCTTCGGCTTTTTTGTACATTTCCCAAATTTCT 708463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478434676459320