Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq25716 82.4 6e-11 seq25310 82.4 6e-11 >seq25716 Length=1210045 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | | ||||||||| | || ||| ||||| | ||| || || | Sbjct 962558 GCCACCACGGAGGCGGAGCACCAAATGAAGGGTAGACTCTTTTTGAATATTATAGTCAGC 962499 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | |||||| | || || | || ||||| || || |||| | ||| ||||| | || Sbjct 962498 AAGTGTACGACCATCCTCTAGCTGCTTGCCAGCGAATATCAGCCTCTGCTGATCAGGTGG 962439 Query 43002 CACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | ||||||||| || |||| || | ||||| || ||| ||||| | ||| | Sbjct 962438 AATACCTTCTTTGTC-CTGAATCTTAGCCTTGACATTGTCAATGGTGTCTGAACTCTCAA 962380 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || || || || || || ||||||||||| |||||||| Sbjct 962379 CCTCCAGTGTAATTGTCTTGCCAGTGAGGGTTTTCACAAAGATTTGCAT 962331 >seq25310 Length=177726 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||| | || || | || ||||| | ||| || || || | ||| ||||| | Sbjct 154709 GCCTCCCCTCAATCGGAGAACTAAATGAAGAGTTGATTCTTTCTGAATATTATAATCTGC 154768 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || | | || || | |||||| ||||| || |||| ||||||||||| | || Sbjct 154769 AAGCGTCCTGCCATCTTCGAGTTGTTTTCCGGCGAAGATCAGACGCTGTTGATCAGGAGG 154828 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | ||||| || || |||| |||| || | ||| ||||||| ||| ||||| Sbjct 154829 GATGCCTTCCTTATCTTGGATCTTGGCTTTTACGTTATCAATTGTGTCG-GAGCTCTCGA 154887 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | ||||| || || ||||| || ||||| ||||| |||||||| Sbjct 154888 CCTCAAGAGTTATGGTCTTGCCGGTGAGGGTTTTGACAAAGATTTGCAT 154936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381249855070254