Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq25760 269 4e-67 seq24687 114 2e-20 >seq25760 Length=3792821 Score = 269 bits (298), Expect = 4e-67 Identities = 432/618 (70%), Gaps = 2/618 (0%) Strand=Plus/Plus Query 42059 ATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAAC 42118 |||||||| |||||||||||||| | |||||||||| ||||| ||||| ||||| Sbjct 707903 ATCAAACACGCGAAATCGCAGTGTAAGCCCTCATCTCGTGAGATTAACTCGTTTGAAAAT 707962 Query 42119 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGA 42177 || || || ||||||| ||||||||||||||||||||||| | |||| || |||||| Sbjct 707963 GTCAGACCCGGCATTAACCCACGCTTTTTAAGCCAAAATATCG-CGCAGAAACTTCCAGA 708021 Query 42178 AAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTC 42237 ||||| || ||||| || || || ||||||| ||||| || || | | | Sbjct 708022 GAAGAAAATCCCTTCAACACAAGCGAAAGCAATAATCCTCTCAGCAAAAGATTCCGAGCC 708081 Query 42238 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 | |||||| || |||||| || || ||||| || ||||| | ||| || || || Sbjct 708082 GTCTATCCATTTCAAAGCCCACTCCGCTTTCTTCGCTATGCAAGGAACCGTCTCGATAGC 708141 Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357 | ||| | | ||| |||||||| ||||| | ||| || || | ||||||| || Sbjct 708142 GTGAAACAAACGGTTCTTTTCATTGGAGTCTTTGATATAAGTCTCCAACAAAAGAGAGTA 708201 Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGT 42417 |||||| || || ||||| ||||| || || || || ||||||||| | ||||| | Sbjct 708202 CATTTCAGAGTGGATGTTCTCAATAGCGATTTGGAAACCGTAGAAAGCACGCGCCTCAGC 708261 Query 42418 AACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGC 42477 || || || ||| | ||| || | || | ||||| || || ||||| ||| Sbjct 708262 CACTTGAACCTCTTTCATAAAACGGCCGGCGAGGTTTTCAAGGACGATACCGTCGGAGGC 708321 Query 42478 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCA 42537 || || || || | || || || || | ||||| || || |||| | ||| Sbjct 708322 GGCGAAGAAGGCGAGGACGTGAGAGATGAAGTGCTTTTCATCGGGAGTTAGGGATTCCCA 708381 Query 42538 ATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTT 42597 | | || ||||| ||| | ||| ||||| ||| ||||||||||||||||||| || || Sbjct 708382 GTGACGGAGATCTTGAGAGAGATCCACTTCCTCTGCCGTCCAAAATGATGCTTCGGCTTT 708441 Query 42598 TTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATT 42657 ||| ||||| | ||| || || | ||||| |||||||| ||| |||| | ||| || Sbjct 708442 TTTGTACATTTCCCAAATTTCTGGGTATTGGATTGGGAACATACAGAATCGGTCTGGGTT 708501 Query 42658 TGGTGCAAGGATCGGTTC 42675 || || || | ||||| Sbjct 708502 GGGAGCGAGAAGGGGTTC 708519 >seq24687 Length=27406 Score = 114 bits (126), Expect = 2e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 |||||| ||||| | || | || || | ||| | || || |||||||||| |||||| Sbjct 5054 TCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCTTAACATTGGAACAATACC 5113 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||| |||| ||||| || || |||||||| || |||||||||||||| ||| || Sbjct 5114 ATTAGATGTCCCATTTGTTCCTCGAATATAGCTGCCTGTGGCACGAATATTGTGAATAGA 5173 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| ||||| || || ||| ||| | || || |||| |||||||| || Sbjct 5174 GACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTTAGAGTATCATAAAT 5233 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 72399 ||| || ||||||||||| ||||| | | ||| |||||| Sbjct 5234 GCCTTCAATACTATCATCTTTCATGCACACCAAAAAGCAGCTA 5276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670923068009880