Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq25310 116 4e-21 seq25706 107 2e-18 >seq25310 Length=177726 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| | || || | ||||||||||| || |||||||| || || || ||||| Sbjct 154709 GCCTCCCCTCAATCGGAGAACTAAATGAAGAGTTGATTCTTTCTGAATATTATAATCTGC 154768 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || || |||||||||||||| || || |||||||||| || ||||| ||||| Sbjct 154769 AAGCGTCCTGCCATCTTCGAGTTGTTTTCCGGCGAAGATCAGACGCTGTTGATCAGGAGG 154828 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| || || || || ||||| | || | ||||| | | || || Sbjct 154829 GATGCCTTCCTTATCTTGGATCTTGGCTTTTACGTTATCAATTGTGTCGGAGCTCTCGAC 154888 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| ||| | ||||||||||| | ||||| || || ||||||||| Sbjct 154889 CTCAAGAGTTATGGTCTTGCCGGTGAGGGTTTTGACAAAGATTTGCATA 154937 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| || || | ||||| ||||| || || || || || ||||| ||||| Sbjct 166307 CCTCCTCTCAACCGAAGAACTAGATGAAGGGTCGACTCCTTCTGAATGTTATAATCTGCA 166366 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || |||||||||||||| || || |||||||||| || ||||| ||||| Sbjct 166367 AGGGTCCTGCCATCTTCGAGTTGTTTTCCGGCGAAGATCAGACGCTGTTGATCAGGAGGG 166426 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| || || ||||| | || | ||||| | | || || Sbjct 166427 ATGCCTTCCTTGTCTTGGATCTTGGCTTTTACGTTATCAATTGTGTCGGAGCTCTCGACC 166486 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| ||| | ||||||||||| | || || || || ||||||||| Sbjct 166487 TCAAGAGTTATGGTCTTGCCGGTGAGGGTCTTGACAAAGATTTGCATA 166534 >seq25706 Length=1095516 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | || | |||| ||| |||||||| || || || ||||| | Sbjct 699379 CCTCCACGGAGACGAAGCACAAGGTGAAGTGTTGATTCTTTCTGGATATTATAATCAGCC 699438 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | | ||||| || ||||| |||||| |||| || | ||||||||| || || Sbjct 699439 AAAGTACGCCCATCTTCAAGCTGTTTTCCAGCAAAGATTAGCCTTTGCTGATCTGGGGGA 699498 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||| ||| || | | || | ||||| || || ||| Sbjct 699499 ATTCCTTCTTTGTCCTGAATCTTTGCCTTGACATTATCAATAGTGTCGCTGCTCTCAACT 699558 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | ||||| || ||||| ||||| ||||| || ||||| Sbjct 699559 TCAAGAGTAATGGTCTTTCCCGTCAAGGTTTTGACGAAGATCTGCAT 699605 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||||||||| ||||| |||||| | |||| ||||||||| ||||| || Sbjct 699637 GTTGATTCTTTTTGAATGTTATAATCGGCTAAGGTGCGGCCGTCTTCGAGCTGTTTTCCT 699696 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| ||||||||||| || || || || ||||| ||||| ||||| ||| Sbjct 699697 GCGAAGATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTGGCTTTC 699756 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| || || || || | ||| | ||||| || || | ||| Sbjct 699757 ACGTTGTCTATTGTGTCGCTGCTCTCCACCTCCAGAGTGATGGTCTTTCCTGTGAGGGTT 699816 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 699817 TTCACGAAAATCTGCAT 699833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506851122350160