Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq25310 116 3e-21 seq25706 105 5e-18 seq25337 96.9 3e-15 seq25319 96.9 3e-15 seq25573 95.1 9e-15 seq25716 93.3 3e-14 >seq25310 Length=177726 Score = 116 bits (128), Expect = 3e-21 Identities = 160/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||||| ||||| || || || || || ||||| |||||| | | | | ||||||| Sbjct 154955 AACTAGGTGAAGAGTAGACTCCTTCTGGATGTTATAATCGGCCAAAGTACGGCCGTCTTC 155014 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| || || ||| | ||||| | ||||||||| ||||||||||||||| | Sbjct 155015 GAGTTGCTTTCCGGCGAAGATCAACCTTTGTTGGTCAGGTGGAATTCCTTCTTTACCTTG 155074 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| ||| ||| | || |||||||| | | || || || | ||||| ||||| Sbjct 155075 GATCTTGGCCTTGACATTATCGATGGTATCAGAACTCTCCACCTCGAGAGTAATAGTTTT 155134 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATAAAA 15377 ||| || | ||||| || || || ||||||||||||| |||| Sbjct 155135 ACCGGTTAAGGTTTTGACGAAGATCTGCATATTTGAAAGAAAAA 155178 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || || ||||| ||||| |||||| | | | | ||||||| | || Sbjct 166559 TGAAGAGTAGATTCCTTTTGGATGTTATAATCGGCCAAAGTACGGCCGTCTTCGAGCTGC 166618 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | ||||| | ||||||||| ||| || ||||||||||| || ||| Sbjct 166619 TTTCCGGCGAAGATCAACCTTTGTTGGTCAGGTGGGATCCCTTCTTTGTCTTGGATCTTG 166678 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || |||||||| | || || || | ||||| ||||| || || Sbjct 166679 GCCTTCACATTATCGATGGTATCAGAGCTCTCCACCTCCAGAGTAATTGTTTTCCCGGTT 166738 Query 15341 AGAGTTTTTACAAAAATTTGCATATTT 15367 | |||||| ||||| || ||||||||| Sbjct 166739 AAAGTTTTGACAAAGATCTGCATATTT 166765 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| || ||||||| | |||||||||||| || || ||||| || || || ||||| Sbjct 154708 TGCCTCCCCTCAATCGGAGAACTAAATGAAGAGTTGATTCTTTCTGAATATTATAATCTG 154767 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | || | ||||| | |||||| || ||| | |||| ||| ||||| || | Sbjct 154768 CAAGCGTCCTGCCATCTTCGAGTTGTTTTCCGGCGAAGATCAGACGCTGTTGATCAGGAG 154827 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | || ||||| || || || ||| ||||| | || || || ||| | || | Sbjct 154828 GGATGCCTTCCTTATCTTGGATCTTGGCTTTTACGTTATCAATTGTGTCGGAGCTCTCGA 154887 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || | || ||||| || || || || ||||| ||||| ||||||||| Sbjct 154888 CCTCAAGAGTTATGGTCTTGCCGGTGAGGGTTTTGACAAAGATTTGCATA 154937 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| |||||||| ||||| || || || |||||| ||| | | | || ||||| || Sbjct 154277 ATGGAGGGTGGACTCTTTCTGAATATTATAATCGGCCAGAGTACGTCCATCCTCTAACTG 154336 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || || || |||||| | || || || |||||| || || || || || || Sbjct 154337 CTTCCCTGCAAATATCAGCCTCTGCTGATCAGGTGGAATCCCCTCCTTATCTTGGATCTT 154396 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| ||| | || || ||||| |||| || |||| || ||||| || || || Sbjct 154397 GGCCTTCACATTATCAATCGTATCAGAGCTTTCGACCTCTAGAGTTATGGTCTTGCCGGT 154456 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 |||||||||||||| || ||||| Sbjct 154457 GAGAGTTTTTACAAAGATCTGCAT 154480 >seq25706 Length=1095516 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 15149 CTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCG 15208 ||||| || | ||||| || || || || || ||||| ||||| | | | || | Sbjct 699163 CTTAACACAAGGTGAAGTGTTGATTCCTTCTGAATGTTATAATCAGCCAAAGTCCTTCCA 699222 Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| | || || || ||| | ||||| | || || || |||||| ||||||||| Sbjct 699223 TCTTCAAGCTGCTTTCCTGCGAAAATCAACCTCTGCTGATCTGGTGGAATCCCTTCTTTG 699282 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 || ||| || ||| ||| | || || || || || ||||||| || ||||||||| Sbjct 699283 TCTTGAATCTTCGCCTTGACATTATCGATTGTGTCACTGCTTTCTACCTCCAAGGTAATG 699342 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || |||| || || ||||||||||||||| Sbjct 699343 GTCTTTCCCGTCAAGGTCTTAACAAAAATTTGCATA 699378 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || ||||| || || || ||||| | | | | | | ||||| | ||| Sbjct 699403 TGAAGTGTTGATTCTTTCTGGATATTATAATCAGCCAAAGTACGCCCATCTTCAAGCTGT 699462 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || ||||| | || | | ||| || || ||||||||||||||||| ||| ||| Sbjct 699463 TTTCCAGCAAAGATTAGCCTTTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGAATCTTT 699522 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 || ||| ||| | || || || ||||| | || || || | |||||||| || || || Sbjct 699523 GC-CTTGACATTATCAATAGTGTCGCTGCTCTCAACTTCAAGAGTAATGGTCTTTCCCGT 699581 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| || || || ||||| Sbjct 699582 CAAGGTTTTGACGAAGATCTGCAT 699605 >seq25337 Length=191068 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 15171 AATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGT 15230 || |||| || || |||||||| | | |||| | ||||| | ||| || |||||| Sbjct 89123 AACCTTTCTGGATATTGTAATCAGCCAAAGTTCTACCATCTTCAAGTTGCTTTCCAGCGA 89064 Query 15231 ATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAA 15290 | ||||| || || ||||| |||||| ||||||||||| || ||| ||| ||| Sbjct 89063 AGATCAAGCGCTGCTGGTCAGGTGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTGACAT 89004 Query 15291 TTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTA 15350 | || |||||||| || | ||||| || | || || || || || || || ||||| | Sbjct 89003 TGTCGATGGTATCACTGCTCTCTACCTCGAGAGTTATTGTCTTCCCAGTTAGGGTTTTCA 88944 Query 15351 CAAAAATTTGCATATT 15366 | || || ||||| || Sbjct 88943 CGAATATCTGCATCTT 88928 >seq25319 Length=181645 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || ||||||||||| || || || || ||||| || || | | | || | ||| Sbjct 59704 AACACCAAATGAAGGGTTGATTCCTTCTGGATGTTATAGTCAGCCAAAGTCCTTCCATCT 59645 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | || || || || | ||||| | ||| || || |||||| || |||||||| Sbjct 59644 TCAAGCTGCTTTCCTGCAAAAATCAACCTTTGCTGATCCGGTGGAATCCCCTCTTTGTCC 59585 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 |||||| ||| ||| | || ||||| || | || || || |||||||||||| Sbjct 59584 TGAATTTTAGCCTTCACATTATCAATGGTGTCAGAGCTCTCAACCTCCAAGGTAATGGTT 59525 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || ||||| || ||||| || |||||| Sbjct 59524 TTCCCAGTAAGAGTCTTAACAAATATCTGCATA 59492 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | | | || || ||||||||||| || || || |||||||| ||| Sbjct 59263 CCACCTCTGAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCG 59204 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | || || | ||||||||||| | || | | || ||||| ||| Sbjct 59203 AGGGTACGGCCATCCTCCAGCTGTTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGA 59144 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| ||| ||| ||| ||| | || || || || | || || Sbjct 59143 ATACCTTCCTTGTCCTGAATCTTGGCCTTAACATTGTCAATAGTGTCCGAGCTCTCAACT 59084 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||||||| || || || || || || || ||||||||||||||| Sbjct 59083 TCCAAGGTAATAGTCTTGCCAGTGAGGGTCTTCACAAAAATTTGCATA 59036 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 15167 GTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15226 || || || || || ||||||||||| || ||| | || || ||||| || ||| Sbjct 59917 GTAGACTCCTTCTGGATGTTGTAATCTGCCAGGGTTCGGCCATCCTCCAATTGCTTCCCA 59858 Query 15227 GCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTT 15286 || | |||| | ||| ||||| |||||| ||||| ||||| ||||| ||| Sbjct 59857 GCAAAGATCAGCCTTTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGGATTTTAGCCTTC 59798 Query 15287 ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTT 15346 ||| | || |||||||| | || || || | || || ||||| || |||||||| Sbjct 59797 ACATTGTCAATGGTATCTGAGCTCTCAACTTCAAGAGTGATAGTTTTCCCAGTCAGAGTC 59738 Query 15347 TTTACAAAAATTTGCAT 15363 || ||||| |||||||| Sbjct 59737 TTGACAAATATTTGCAT 59721 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| || || || |||||||| || ||| | | | ||||| Sbjct 59473 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCTAGGGTGCGACCATCTTCA 59414 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || ||||| | || | | |||||||| ||||| || || ||||| | Sbjct 59413 AGCTGCTTCCCAGCAAAGATAAGCCTCTGTTGGTCTGGGGGAATACCCTCCTTGTCCTGA 59354 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| ||| | || || || || | || || || |||||||| || || Sbjct 59353 ATCTTGGCCTTAACATTGTCAATTGTGTCCGAGCTCTCAACTTCCAAGGTAATAGTCTTG 59294 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || || ||||||||||||||| Sbjct 59293 CCAGTGAGGGTCTTCACAAAAATTTGCATA 59264 >seq25573 Length=429841 Score = 95.1 bits (104), Expect = 9e-15 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || ||||| || || ||||| |||||||| ||| || | | |||| || | || Sbjct 359425 TGGAGGGTTGATTCCTTTTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCAAGCTGC 359484 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | || |||||||||||||| || || ||||| ||||| |||||| Sbjct 359485 TTTCCGGCGAAGATTAAACGTTGTTGGTCCGGGGGTATACCTTCCTTGTCTTGGATTTTG 359544 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || || || || ||||| |||| ||| || ||||| || || Sbjct 359545 GCCTTCACATTGTCGATTGTGTCTGATGACTCTACCTCTAGGGTTATTGTTTTCCCCGTT 359604 Query 15341 AGAGTTTTTACAAAAATTTGCATATTT 15367 || ||||| ||||| || ||||||||| Sbjct 359605 AGGGTTTTCACAAAGATCTGCATATTT 359631 >seq25716 Length=1210045 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||||||||| || |||||||| || || || || || | | | || ||| Sbjct 962539 ACCAAATGAAGGGTAGACTCTTTTTGAATATTATAGTCAGCAAGTGTACGACCATCCTCT 962480 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||||||| |||||| | || || || |||||| ||||||||||| | Sbjct 962479 AGCTGCTTGCCAGCGAATATCAGCCTCTGCTGATCAGGTGGAATACCTTCTTTGTCCTGA 962420 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| | || ||||| || | | || || || | ||||| || || Sbjct 962419 ATCTTAGCCTTGACATTGTCAATGGTGTCTGAACTCTCAACCTCCAGTGTAATTGTCTTG 962360 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| ||||| |||||||| Sbjct 962359 CCAGTGAGGGTTTTCACAAAGATTTGCAT 962331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362065480597983