Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq25716 84.2 2e-11 seq25634 82.4 6e-11 >seq25716 Length=1210045 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | ||||||||||| |||||||||||||| || | ||| | | |||||| Sbjct 962311 ACCAAGTGAAGAGTAGACTCCTTCTGAATATTGTAATCAGCAAGTGTGCGGCCATCCTCC 962252 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 ||||||||||| ||| | || || ||||| || || || | |||||||| || Sbjct 962251 AGCTGTTTACCAGCAAAGATCAGCCTCTGTTGGTCTGGCGGGATACCCTCTTTATC 962196 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||||| ||||| ||||| || ||||||||||| || | || | | ||||| ||||| Sbjct 963218 GTGCAGGGTAGATTCCTTCTGGATATTGTAATCAGCAAGGGTCCTCCCATCCTCAAGCTG 963159 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 || || ||| |||| | ||||||||||| || | ||| || ||||| |||||| Sbjct 963158 CTTCCCAGCAAAAATCAACCTCTGCTGATCTGGTGGGATGCCTTCCTTGTCTTGAATTTT 963099 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 || || | | | |||||||| | |||| || | ||| || || || ||||| Sbjct 963098 TGCCTTCACATTGTCAACAGTATCTGAACTCTCCACCTCCAAGGTTATAGTCTTCCCTGT 963039 Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041 | || || ||||| || ||||| Sbjct 963038 AAGGGTCTTCACAAAGATCTGCAT 963015 >seq25634 Length=602113 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | |||||||| ||||||||||| ||||| || | || | ||||| Sbjct 348759 CACCAAGTGGAGTGTAGACTCTTTTTGAATATTATAATCAGCAAGAGTGCGTCCATCCTC 348700 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||||| || ||| | || | ||||||||||| ||| | ||||| ||||| Sbjct 348699 GAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGATCTGGGGGAATACCCTCCTTGTCTTG 348640 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 |||||| ||| || | | | | ||| || | ||| ||| | ||| || || || Sbjct 348639 AATTTTGGCTTTAACATTGTCAATAGTGTCTGAACTCTCAACTTCCAAGGTGATAGTCTT 348580 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || || ||||| || ||||| Sbjct 348579 GCCAGTAAGGGTCTTTACAAAGATCTGCAT 348550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414442629711622