Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq25744 98.7 6e-16 seq25634 82.4 5e-11 >seq25744 Length=1702523 Score = 98.7 bits (108), Expect = 6e-16 Identities = 165/235 (70%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| || |||| ||||| |||||| || ||||| || || || ||||| || | | Sbjct 948294 CCTCCTCTCAATCGCAGCACCAGATGCAAAGTAGACTCCTTCTGGATGTTGTAGTCCG-C 948236 Query 33203 AAATTGA-GTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 || | | | ||| || | ||||||||| || |||| ||||||||||||| || Sbjct 948235 AAGTGTACGGCCGTCTTCGAGTTGCTTTCCTGCGAAGATTAGCCGTTGCTGGTCCGGTGG 948176 Query 33262 TATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 |||||||| || || | | | ||| || || | | || || ||| || || Sbjct 948175 GATGCCTTCCTTGTCTTGGATCTTGGCC---TTCACATTGTCGATGGTATCGGAGGATTC 948119 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373 ||| || || ||||| || || ||||| || ||||| ||||| || ||||| ||| Sbjct 948118 AACCTCTAGGGTTATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTTT 948064 >seq25634 Length=602113 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| || ||||| || | |||||| || | || || || ||||| || || ||||||| Sbjct 348549 ACCACCCCTTAATCGGAGCACCAAGTGGAGAGTTGATTCCTTTTGGATGTTATAATCAGC 348490 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | || || || || | ||||| ||| ||| || | | ||||||||||| ||| Sbjct 348489 AAGGGTGCGTCCATCCTCAAGCTGCTTGCCAGCAAAAATCAGTCTTTGCTGGTCCGGGGG 348430 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || || || || || |||| |||||| | | ||| ||||| | || || Sbjct 348429 AATACCCTCCTTGTCTTGAATCTTAGCTTTTACATTGTCAATAGTGTCTGAGCTTTCTAC 348370 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || || || || || ||||| |||||||||||||| Sbjct 348369 CTCAAGGGTGATAGTCTTGCCAGTTAGGGTTTTCACGAAAATTTGCAT 348322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318677508117174