Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq25310 100 2e-16 seq25716 87.8 1e-12 >seq25310 Length=177726 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||| | ||| || ||| |||||| |||||||| ||||| | |||| |||| || Sbjct 165868 CACAAGATGGAGTGTGGACTCTTTCTGAATATTGTAATCAGCAAGCGTACGCCCATCCTC 165927 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 ||| || || ||||||||||||| || ||||| || | || | || || |||||| Sbjct 165928 CAACTGCTTCCCTGCAAATATCAGCCTCTGCTGATCAGGTGGAATCCCCTCCTTATCTTG 165987 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 ||||||| ||| || || ||| || || | |||||| || | || || || || Sbjct 165988 AATTTTTGCTTTCACGTTATCAATTGTGTCCGAGCTCTCCACTTCCAGTGTTATGGTCTT 166047 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || |||||||| ||||| ||||| Sbjct 166048 CCCTGTCAATGTCTTCACGAATATCTGCAT 166077 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 ||| || || || ||||||||| || ||| | || || | ||| ||||| || || Sbjct 154973 CTCCTTCTGGATGTTATAATCGGCCAAAGTACGGCCGTCTTCGAGTTGCTTTCCGGCGAA 155032 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 ||||||| ||| ||||| | || | ||||||||| || || || ||||| | Sbjct 155033 GATCAACCTTTGTTGGTCAGGTGGAATTCCTTCTTTACCTTGGATCTTGGCCTTGACATT 155092 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 | | | ||||| | |||||| |||| ||||| |||||||||||||| || || || Sbjct 155093 ATCGATGGTATCAGAACTCTCCACCTCGAGAGTAATAGTTTTACCGGTTAAGGTTTTGAC 155152 Query 44110 AAATATTTGCAT 44121 || || ||||| Sbjct 155153 GAAGATCTGCAT 155164 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 || ||||| || ||||||||| || ||| | || || | || ||||| || || Sbjct 166571 TCCTTTTGGATGTTATAATCGGCCAAAGTACGGCCGTCTTCGAGCTGCTTTCCGGCGAAG 166630 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 ||||||| ||| ||||| | || | |||||||| ||| || || || || || Sbjct 166631 ATCAACCTTTGTTGGTCAGGTGGGATCCCTTCTTTGTCTTGGATCTTGGCCTTCACATTA 166690 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 | | ||||| | |||||| || | ||||||||||| ||||||||||| || ||| Sbjct 166691 TCGATGGTATCAGAGCTCTCCACCTCCAGAGTAATTGTTTTCCCGGTTAAAGTTTTGACA 166750 Query 44111 AATATTTGCAT 44121 || || ||||| Sbjct 166751 AAGATCTGCAT 166761 >seq25716 Length=1210045 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||||||||| || || |||||||||||||||||| || | | ||| |||| || Sbjct 962540 CACCAAATGAAGGGTAGACTCTTTTTGAATATTATAGTCAGCAAGTGTACGACCATCCTC 962481 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 | || || || || ||||||| || ||||| || | || | ||||||||| || Sbjct 962480 TAGCTGCTTGCCAGCGAATATCAGCCTCTGCTGATCAGGTGGAATACCTTCTTTGTCCTG 962421 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 ||| || ||||| | ||| || |||| ||| || || | |||||||| || Sbjct 962420 AATCTTAGCCTTGACATTGTCAATGGTGTCTGAACTCTCAACCTCCAGTGTAATTGTCTT 962361 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || || | || |||||||| ||||||||| Sbjct 962360 GCCAGTGAGGGTTTTCACAAAGATTTGCATG 962330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354666204600924