Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq25760 149 5e-31 >seq25760 Length=3792821 Score = 149 bits (164), Expect = 5e-31 Identities = 449/681 (66%), Gaps = 17/681 (2%) Strand=Plus/Plus Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904 |||||||||| | ||| ||||| || | |||||| || |||||||| || || || ||| Sbjct 707603 GACATAACAGCCGCTTTCTGATACTCTCCAACTCTCTTCTCAAAAAAATTAGTCTTCCCT 707662 Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACAC 12964 | ||| ||| ||||| |||| ||||||||| | | ||| | || ||| Sbjct 707663 TGTAAACTAATCAGCTCCATCCAATCAAAAGGATTTGACACATTATACTCCTTGCCGCAC 707722 Query 12965 CCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAG 13024 || | | ||||| ||||| ||||||||||| || ||||| ||||||| || | Sbjct 707723 CCAAGCGCACCCAACAACCTGTCTGCAACAAACTCAATATACTGACTCATTAACTCCCCA 707782 Query 13025 TTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACT 13084 ||||| || | || ||| | || || || ||| | | || || | || Sbjct 707783 TTCATCCCCACCAACGCGCAAGGAAGCGCGTCACATACAAACTCCCTCTCGATGTTCACC 707842 Query 13085 GCTTCGATAACTATGTCTCTTATTACGTTCT---CT-AATGGAGGATTTGATAGATGCTT 13140 || || ||||| || ||| || || || ||| ||| | ||| || Sbjct 707843 GCATCTCGCACTAT-TCCCTTCACGCGCTCCTCACTCAATTTTTTCTTTAACAGA--CTG 707899 Query 13141 AAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGA 13200 || |||| ||| || ||||| ||||| || || ||||||| |||| ||||||||| Sbjct 707900 TAA-ATCAAACACGCGAAATCGCAGTGTAAGCCCTCATCTCGTGAGATTAACTCGTTTGA 707958 Query 13201 AAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA-AACGAAC 13259 |||||| ||||||||||| | ||| || ||||||| ||||||||| || ||| || | Sbjct 707959 AAATGTCAGACCCGGCATTAACCCACGCTTTTTAAGCCAAAATATCGC-GCAGAAACTTC 708017 Query 13260 CCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTAT 13319 | || || || || |||||||| || || || || | ||| ||| || | | || Sbjct 708018 CAGAGAAGAAAATCCCTTCAACACAAGCGAAAGCAATAATCCTCTCAGCAAAAG----AT 708073 Query 13320 TTTTA-CTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTT 13378 | | | |||||||| || ||||| | ||||| | | ||| | | Sbjct 708074 TCCGAGCCGTCTATCCATTTCAAAGCCCACTCCGCTTTCTTCGCTATGCAAGGAACCGTC 708133 Query 13379 TCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAAT 13438 || || |||| ||| ||| || ||||| || |||| |||||||| || | ||| Sbjct 708134 TCGATAGCGTGAAACAAACGGTTCTTTTCATTGGAGTCTTTGATATAAGTCTCCAACAA- 708192 Query 13439 AAGCTA-TACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCT 13497 ||| | |||||||| || || || || || || || ||||||||||| || ||| | Sbjct 708193 AAGAGAGTACATTTCAGAGTGGATGTTCTCAATAGCGATTTGGAAACCGTAGAAAGCACG 708252 Query 13498 AGCCTCTGATACCTGAACTTC 13518 ||||| | || ||||| || Sbjct 708253 CGCCTCAGCCACTTGAACCTC 708273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430847077317726