Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_005284.1 Length=54865 Score E Sequences producing significant alignments: (Bits) Value seq24175 98.7 3e-16 seq7934 89.7 2e-13 >seq24175 Length=9337 Score = 98.7 bits (108), Expect = 3e-16 Identities = 183/265 (69%), Gaps = 8/265 (3%) Strand=Plus/Plus Query 31103 CCCAAGCAGCGGCTCCATCGACAGGAAGCGTACGCGCGCGGGTACTGCGAGCAGCTTCGG 31162 ||| |||| ||||||||||| |||||||| || |||| | || |||||| Sbjct 1189 CCCGAGCAAAGGCTCCATCGAGAGGAAGCGGGTGCCAACGGGAGCGTTGATCAGCTTGTC 1248 Query 31163 GATGTCGCGGTCGGCCTCTTCCTGGTTGACGATCGTCGCGCCGATCCAGACGTTATCCGG 31222 || || |||||||| || ||||||||||||||||||||||| ||| || || || || Sbjct 1249 AATATCCCGGTCGGCTTCAGTCTGGTTGACGATCGTCGCGCCGAGCCACACATTGTCGGG 1308 Query 31223 CAGTCGGTCGATTCCGATCTCGCGTAGCATCGCCGCGACGTTGCCGATGCGCTTCGTCAG 31282 | | || ||| ||| |||||||| | |||||||||||||||| || || Sbjct 1309 GGTGCCGCCGGGGAACATCGCGCCGAGCATCGCGGACGCGTTGCCGATGCGCTTGGTTAG 1368 Query 31283 CAACAACCAGTCGAGGTTTGGCGTGTC---GGCGATCAGGCGGAACAGGTC-CGCGCGCC 31338 | || |||| |||| || ||| | | |||| | | ||| | || ||||| || Sbjct 1369 AAGCATCCAGATCAGGTGCGGGGTGGCGAGGATGATCTGACCGAATCGCTCACGCGCACC 1428 Query 31339 ACGCCGGATCGACAGTGTTGTCGAA 31363 |||||| || || |||||||| Sbjct 1429 -CGCCGGCGCGGCA---TTGTCGAA 1449 Score = 87.8 bits (96), Expect = 6e-13 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 30872 TTCACCCCATTGCTTGAACAGGAACGGCACATCTGCGGCAGCGCACTGGTCGCGCAGCGA 30931 ||| |||||||||||||| | | | || | || || |||||||||||||||||||| Sbjct 994 TTCTCCCCATTGCTTGAAGTGATAGGCAACCCCGGCTGCGGCGCACTGGTCGCGCAGCGA 1053 Query 30932 CCGAGCCCAGTCGGGATGCATCGGGCGGGCGCCGTGGCCGCTTTCGCCGCC 30982 | |||||| |||||||| ||||| ||||| ||||||| || ||||| Sbjct 1054 TCTCGCCCAGGATGGATGCATTGGGCGCGCGCCCCGGCCGCTCTCACCGCC 1104 >seq7934 Length=986 Score = 89.7 bits (98), Expect = 2e-13 Identities = 91/116 (78%), Gaps = 2/116 (2%) Strand=Plus/Minus Query 30873 TCACCCCATTGCTTGAACAGGAACGGC-ACATCTGCGGCAGCGCACTGGTCGCGCAGCGA 30931 || |||||||||||||| | ||| ||| | | | || || || || || ||||| ||||| Sbjct 211 TCGCCCCATTGCTTGAA-ATGAAAGGCGATACCAGCTGCCGCACATTGATCGCGTAGCGA 153 Query 30932 CCGAGCCCAGTCGGGATGCATCGGGCGGGCGCCGTGGCCGCTTTCGCCGCCGGCGA 30987 || ||||| |||||||| ||||| |||||| |||||||||| |||||| ||| Sbjct 152 TCGCGCCCACGATGGATGCATTGGGCGCGCGCCGCGGCCGCTTTCACCGCCGACGA 97 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175392724695962