Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq25573 93.3 4e-14 seq25716 89.7 4e-13 seq25634 82.4 6e-11 >seq25573 Length=429841 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 |||||||| |||||||| || || | || ||||||| |||||||| ||| || | Sbjct 359437 TCCTTTTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCAAGCTGCTTTCCGGCGAAG 359496 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 |||||||| || || ||| || | || ||||||||| ||||| ||| | | Sbjct 359497 ATTAAACGTTGTTGGTCCGGGGGTATACCTTCCTTGTCTTGGATTTTGGCCTTCACATTG 359556 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | || || || | ||||| ||| | ||||| ||||| || || || ||||||||| Sbjct 359557 TCGATTGTGTCTGATGACTCTACCTCTAGGGTTATTGTTTTCCCCGTTAGGGTTTTCACA 359616 Query 48716 AAAATCTGCAT 48726 || |||||||| Sbjct 359617 AAGATCTGCAT 359627 >seq25716 Length=1210045 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| |||||||| || ||| |||||||| || || ||||| || ||| || | |||| Sbjct 962540 CACCAAATGAAGGGTAGACTCTTTTTGAATATTATAGTCAGC-AAGTGTACGACCATCCT 962482 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | |||||||| || || | || | | ||||||||| || | || ||| |||||| Sbjct 962481 CTAGCTGCTTGCCAGCGAATATCAGCCTCTGCTGATCAGGTGGAATACCTTCTTTGTCCT 962422 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 ||| || ||||| | | ||||| || | | ||| ||| | ||| || || | Sbjct 962421 GAATCTTAGCCTTGACATTGTCAATGGTGTCTGAACTCTCAACCTCCAGTGTAATTGTCT 962362 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || ||||| ||||||||||| || ||||| Sbjct 962361 TGCCAGTGAGGGTTTTCACAAAGATTTGCAT 962331 >seq25634 Length=602113 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || || || ||| ||||| |||||||| || || || | | |||| | ||||| Sbjct 348987 CACCAAGTGGAGGGTGGATTCCTTCTGAATGTTATAGTCGGCAAGTGTTCGCCCATCCTC 348928 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||||| | | || | | ||||||||| || | | ||||||||| Sbjct 348927 AAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGGATCCCTTCCTTGTCTTG 348868 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||||| | | |||||||| | | |||| ||| | || || || || Sbjct 348867 GATCTTGGCCTTGACATTGTCAATGGTATCAGAACTCTCCACCTCCAAAGTAATAGTCTT 348808 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||||| || |||||||| || ||||| Sbjct 348807 GCCGGTGAGGGTCTTCACAAAGATTTGCAT 348778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421118932783763