Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq25387 111 8e-20 seq25167 109 3e-19 seq25117 109 3e-19 seq25759 107 1e-18 seq25642 107 1e-18 seq25445 107 1e-18 seq25436 107 1e-18 seq25415 107 1e-18 seq25733 105 3e-18 seq25557 105 3e-18 seq25700 104 1e-17 seq25598 104 1e-17 seq24748 104 1e-17 seq25299 86.0 3e-12 >seq25387 Length=224690 Score = 111 bits (122), Expect = 8e-20 Identities = 84/97 (87%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 11435 AGAATTAATAAAAA-ATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 |||| | |||||| | ||||| |||||||| | | |||||||| |||||||||||||| Sbjct 52902 AGAAAAAGTAAAAACAACAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTA 52844 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||||| ||||||||||||||| ||||| Sbjct 52843 TTAGCACGACGCTCTAACCAACTGAGCTAATAGGCCG 52807 >seq25167 Length=117880 Score = 109 bits (120), Expect = 3e-19 Identities = 76/86 (88%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| || |||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 73072 AAAAAA--AATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 73015 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 73014 GCTCTAACCAACTGAGCTAATAGGCC 72989 >seq25117 Length=101576 Score = 109 bits (120), Expect = 3e-19 Identities = 76/86 (88%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 11446 AAAATCAAATT-GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| | ||| |||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 77372 AAAATTACATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 77431 Query 11505 CTCTRACCAACTGAGCTAATGGGCCG 11530 |||| ||||||||||||||| ||||| Sbjct 77432 CTCTAACCAACTGAGCTAATAGGCCG 77457 >seq25759 Length=3402282 Score = 107 bits (118), Expect = 1e-18 Identities = 77/89 (87%), Gaps = 3/89 (3%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||| || ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 2661908 AATAAAAAG---AAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 2661964 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 2661965 GACGCTCTAACCAACTGAGCTAATAGGCC 2661993 >seq25642 Length=629065 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 531178 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 531119 Query 11515 CTGAGCTAATGGGCCGTC 11532 |||||||||| |||| || Sbjct 531118 CTGAGCTAATAGGCCATC 531101 >seq25445 Length=268853 Score = 107 bits (118), Expect = 1e-18 Identities = 74/83 (89%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 11447 AAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCT 11506 ||| ||||| |||||||| | | |||||||| ||||||||||||||||||||||||||| Sbjct 198621 AAAACAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCT 198563 Query 11507 CTRACCAACTGAGCTAATGGGCC 11529 || ||||||||||||||| |||| Sbjct 198562 CTAACCAACTGAGCTAATAGGCC 198540 >seq25436 Length=260652 Score = 107 bits (118), Expect = 1e-18 Identities = 81/95 (85%), Gaps = 1/95 (1%) Strand=Plus/Plus Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 |||| ||||| ||| ||| |||||||| | | |||||||| ||||||||||||||| Sbjct 177827 AGAAACAATAAGAAAAAGAAT-GGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTAT 177885 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| ||||||||||||||| |||| Sbjct 177886 TAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 177920 >seq25415 Length=245787 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 194959 AAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 195018 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 195019 CAACTGAGCTAATAGGCC 195036 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 202531 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 202590 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 202591 TGAGCTAATAGGCC 202604 >seq25733 Length=1382611 Score = 105 bits (116), Expect = 3e-18 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 481760 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 481819 Query 11516 TGAGCTAATGGGCCGTC 11532 ||||||||| |||| || Sbjct 481820 TGAGCTAATAGGCCATC 481836 >seq25557 Length=400181 Score = 105 bits (116), Expect = 3e-18 Identities = 79/92 (86%), Gaps = 1/92 (1%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 101103 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 101162 Query 11516 TGAGCTAATGGGCCGTCGACGATTGTG-ATTT 11546 ||||||||| |||| |||| |||| |||| Sbjct 101163 TGAGCTAATAGGCCAATGACGGGTGTGTATTT 101194 >seq25700 Length=1013978 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 708832 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 708891 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 708892 TGAGCTAATAGGCC 708905 >seq25598 Length=499395 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 376886 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 376945 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 376946 TGAGCTAATAGGCC 376959 >seq24748 Length=32509 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 27380 TGGCCCATGCTAGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 27439 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 27440 TGAGCTAATAGGCC 27453 >seq25299 Length=171981 Score = 86.0 bits (94), Expect = 3e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||| |||| ||||||||| ||||||||||||||||||| ||||||||||||||| |||| Sbjct 383 TCGGACCTGCGACCTTCGTGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 325 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261409095276988