Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq25582 181 2e-41 seq25111 161 2e-35 seq25760 123 4e-24 seq25702 95.1 2e-15 >seq25582 Length=453650 Score = 181 bits (200), Expect = 2e-41 Identities = 187/245 (76%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||||||||||||||| || |||||||| || || ||| |||||||| | ||| Sbjct 264619 CTTCGTGATAACATCCAAGGAATAACGAAGCCAGCAATTCGGCGTTTGGCTCGTAGAGGT 264678 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| || ||| ||| |||| ||||||| || | ||| | ||||||||| Sbjct 264679 GGTGTGAAGCGTATCAGTGGGTTGATCTACGAAGAGACACGAGGTGTCCTCAAGATCTTC 264738 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| |||||| |||||| || || || ||||||||| || |||||||| Sbjct 264739 CTCGAGAATGTTATCAGAGATGCTGTCACATACACTGAGCACGCTCGCCGGAAGACTGTG 264798 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || |||||||| | ||||||||| | || | |||||| | | ||||||| ||||| Sbjct 264799 ACTGCCATGGATGTTGTCTATGCACTCAAGAGGCAAGGCAGGACTCTTTATGGGTTTGGT 264858 Query 16694 AGTTA 16698 |||| Sbjct 264859 GGTTA 264863 >seq25111 Length=101255 Score = 161 bits (178), Expect = 2e-35 Identities = 181/242 (75%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 ||||||| || ||||| || || ||||| ||||| |||||| |||||||| | || || | Sbjct 24702 GAGATAATATTCAAGGCATTACAAAGCCTGCTATACGTCGTTTGGCTCGTAGAGGCGGTG 24643 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 ||||| | || ||| || |||| || |||| ||||| ||| | ||||||||||| Sbjct 24642 TCAAGAGAATCAGTGGGCTGATCTACGAGGAGACTCGTGGGGTTCTTAAGATCTTCCTTG 24583 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || |||||| || ||| || ||||| |||| | |||||||| || Sbjct 24582 AGAATGTGATTAGAGATGCTGTCACCTACACTGAGCATGCTAGGAGAAAGACTGTTACTG 24523 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | || ||||| |||||| | |||||| | | |||||||||||||| ||| Sbjct 24522 CCATGGATGTTGTTTATGCTTTGAAAAGGCAAGGCAGAACTCTTTATGGTTTTGGAGGTT 24463 Query 16698 AA 16699 || Sbjct 24462 AA 24461 >seq25760 Length=3792821 Score = 123 bits (136), Expect = 4e-24 Identities = 175/246 (71%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| ||||| || || |||||||| || | ||||| ||||| | || || | Sbjct 1850767 GAGATAACATTCAAGGTATTACAAAGCCAGCAATTAGACGTCTTGCTCGCAGAGGAGGCG 1850826 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || ||| | | || ||||||| | | ||||| |||||||| | Sbjct 1850827 TCAAGCGTATCAGTGGTCTAATTTACGAAGAGACAAGAGGCGTTTTAAAGATCTTTTTGG 1850886 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | ||||||| | || || ||||| ||| | || ||||| || Sbjct 1850887 AGAATGTGATTCGTGATGCTGTTACTTACACTGAGCATGCTCGTAGAAAAACTGTTACTG 1850946 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| |||| ||||| | |||||||||||||||| | || || ||||| ||| Sbjct 1850947 CCATGGATGTCGTTTATGCTCTTAAACGTCAAGGCCGTACCCTCTACGGCTTTGGTGGTT 1851006 Query 16698 AATCTT 16703 || || Sbjct 1851007 GATTTT 1851012 >seq25702 Length=1063736 Score = 95.1 bits (104), Expect = 2e-15 Identities = 169/244 (69%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 ||||||| || ||||| ||||| || ||||| ||||| | ||||| ||| | ||||||| Sbjct 617269 GAGATAATATTCAAGGGATCACAAAACCAGCCATCCGCAGGCTGGCCCGTAGGGGTGGAG 617328 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| | ||| | | ||||| |||| | | || | |||||||| || Sbjct 617329 TCAAGCGTATTAGTGGCCTCATTTATGAGGAGACCAGAGGCGTCCTCAAGATCTTTCTTG 617388 Query 16578 AGACCGTTATCCATGATGCT-TTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | | ||||||| |||||| || || || || || || ||| | || ||||| || Sbjct 617389 AAAATGTTATCCGCGATGCTGTTACA-TACACTGAACATGCTCGTAGAAAAACTGTTACT 617447 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 | ||||| | || || || | || | || ||||| | ||||||||||||| || Sbjct 617448 GCTATGGACGTTGTTTACGCTCTTAAGAGACAGGGCCGCACTCTTTATGGTTTTGGTGGT 617507 Query 16697 TAAT 16700 | || Sbjct 617508 TGAT 617511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79051644708759