Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq25760 262 5e-65 seq24687 91.5 2e-13 seq25599 89.7 6e-13 >seq25760 Length=3792821 Score = 262 bits (290), Expect = 5e-65 Identities = 431/620 (70%), Gaps = 6/620 (1%) Strand=Plus/Plus Query 33298 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 33357 |||||||| |||||||||||||| | ||||| |||| |||| ||||| ||||| Sbjct 707903 ATCAAACACGCGAAATCGCAGTGTAAGCCCTCATCTCGTGAGATTAACTCGTTTGAAAAT 707962 Query 33358 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAA 33417 || || || ||||||| ||||||||||||||||||||||| | ||| |||||| Sbjct 707963 GTCAGACCCGGCATTAACCCACGCTTTTTAAGCCAAAATATCGCGCAGAAACTTCCAGAG 708022 Query 33418 AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTG 33474 ||||| || ||||| || ||| || ||||||| ||||| || || | | || | Sbjct 708023 AAGAAAATCCCTTCAACACAAGCGAAAGCAATAATCCTCTCAGCAAAAGATTCCGAGCCG 708082 Query 33475 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 33534 || |||||| || |||||| || || ||||| || ||||| | ||| || || Sbjct 708083 TC---TATCCATTTCAAAGCCCACTCCGCTTTCTTCGCTATGCAAGGAACCGTCTCGATA 708139 Query 33535 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 33594 || | ||| | | ||| |||||||| ||||| | |||||| || | ||||||| Sbjct 708140 GCGTGAAACAAACGGTTCTTTTCATTGGAGTCTTTGATATAAGTCTCCAACAAAAGAGAG 708199 Query 33595 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33654 |||||||| || || ||||| ||||| || || || || ||||||||| | ||||| Sbjct 708200 TACATTTCAGAGTGGATGTTCTCAATAGCGATTTGGAAACCGTAGAAAGCACGCGCCTCA 708259 Query 33655 GTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTG 33714 | | || || ||| | ||| || | || | |||||| || || ||||| | Sbjct 708260 GCCACTTGAACCTCTTTCATAAAACGGCCGGCGAGGTTTTCAAGGACGATACCGTCGGAG 708319 Query 33715 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 33774 || || || || || | || || || || | ||||| || || ||||| | | Sbjct 708320 GCGGCGAAGAAGGCGAGGACGTGAGAGATGAAGTGCTTTTCATCGGGAGTTAGGGATTCC 708379 Query 33775 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33834 || | | || ||||| ||| | ||| ||||| || | |||||||||||||| || || Sbjct 708380 CAGTGACGGAGATCTTGAGAGAGATCCACTTCCTCTGCCGTCCAAAATGATGCTTCGGCT 708439 Query 33835 TTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGA 33894 ||||| ||||| | ||| || || |||||||||||||| ||| |||| | ||| Sbjct 708440 TTTTTGTACATTTCCCAAATTTCTGGGTATTGGATTGGGAACATACAGAATCGGTCTGGG 708499 Query 33895 TTTGGTGCAAGGATGGGTTC 33914 || || || || | |||||| Sbjct 708500 TTGGGAGCGAGAAGGGGTTC 708519 >seq24687 Length=27406 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 |||||| ||||| | || | || || | ||| | || || |||||||||| |||||| Sbjct 5054 TCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCTTAACATTGGAACAATACC 5113 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 || ||| | ||||| || || |||||||| || ||||||||||||| ||| || Sbjct 5114 ATTAGATGTCCCATTTGTTCCTCGAATATAGCTGCCTGTGGCACGAATATTGTGAATAGA 5173 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 | ||| ||||| || || ||| ||| | || || |||| || ||||| || Sbjct 5174 GACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTTAGAGTATCATAAAT 5233 Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593 || || || |||||||| ||||| | | ||| |||||| Sbjct 5234 GCCTTCAATACTATCATCTTTCATGCACACCAAAAAGCAGCTA 5276 >seq25599 Length=502261 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/228 (69%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 63369 TTTCCTCCC---TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63425 ||||||||| ||||| | ||| | ||| |||| |||| | |||| | ||| |||| | Sbjct 182325 TTTCCTCCCCCTTGATCAACGTAGCGAGCAGTGTCATTAAACACTCGAAGCATGGGAACA 182266 Query 63426 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTA 63485 ||||| |||||| ||||| || ||| | ||| | || || | ||||||| ||| Sbjct 182265 ATACCATTTGATTCCCCATTTGTCCCGCAAATAAAACTGCCTGTAGCACGAACGTTATGC 182206 Query 63486 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCA 63545 | || ||||| ||||| || || | || || | || || || || |||||| Sbjct 182205 ACAGAAAGACCAATTCCTCCAGCAACCTTGCTAATAACAGCACACTCCTTCAAAGTGTCA 182146 Query 63546 TAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593 | || ||||| ||||||||||| ||||| ||||| |||||| Sbjct 182145 AATATGCCCTCGATGCTATCATCTTTCATGCACCCAAGAAAGCAGCTA 182098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622746587641080