Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq25319 105 6e-18 seq25706 93.3 4e-14 seq25310 89.7 5e-13 seq25744 86.0 6e-12 seq25716 82.4 7e-11 >seq25319 Length=181645 Score = 105 bits (116), Expect = 6e-18 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA---TCA 26825 |||||| | ||||| ||||| | ||||| || | |||||| | || | ||| ||| Sbjct 58581 ATGCAAATCTTTGTTAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTGGAAAGCTCA 58640 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||||||||| | || ||| |||||| ||||| || ||||| ||||| ||| Sbjct 58641 ---GACACCATCGACAATGTGAAAGCAAAGATCCAAGACAAGGAGGGGATCCCTCCAGAT 58697 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 |||||||| | || | | || ||||| |||||||||| | | | | |||||| Sbjct 58698 CAACAAAGGTTGATCTTTGCTGGAAAACAGCTCGAAGATGGTCGCACTCTTGCTGACTAT 58757 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||||||| || || || |||| |||| || | || ||||| || Sbjct 58758 AACATTCAAAAGGAGTCAACCCTCCACTTGGTTCTTCGCCTCAGAGGTGG 58807 >seq25706 Length=1095516 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || || || || ||||| | || ||| | || ||||| | Sbjct 699377 ATGCAAATTTTTGTTAAGACCTTGACGGGAAAGACCATTACCTTGGAGGTAGAAAGCAGT 699318 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| ||||| | ||||| |||||| |||||||||||||| || || ||||| Sbjct 699317 GACACAATCGATAATGTCAAGGCGAAGATTCAAGACAAAGAAGGGATTCCACCAGATCAG 699258 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 || || | |||| || || || || || ||||||| || | | | || || ||||| Sbjct 699257 CAGAGGTTGATTTTCGCAGGAAAGCAGCTTGAAGATGGAAGGA-CTTTGGCTGATTATAA 699199 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||| || ||||| || | || || || | || ||| | ||||| Sbjct 699198 CATTCAGAAGGAATCAACACTTCACCTTGTGTTAAGGCTTCGTGGAGG 699151 >seq25310 Length=177726 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 26762 AAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA 26821 ||| || ||||| | ||||| ||||| ||||| || ||| | || || | || | || Sbjct 166768 AAAAAATATGCAGATCTTTGTCAAAACTTTAACCGGGAAAACAATTACTCTGGAGGTGGA 166709 Query 26822 ATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCC 26881 || |||||||| | || || ||||| |||||||||||||| || || Sbjct 166708 GAGCTCTGATACCATCGATAATGTGAAGGCCAAGATCCAAGACAAAGAAGGGATCCCACC 166649 Query 26882 CGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGA 26941 || |||||||| | || | || ||| || || |||||||| | | | | ||| Sbjct 166648 TGACCAACAAAGGTTGATCTTCGCCGGAAAGCAGCTCGAAGACGGCCGTACTTTGGCCGA 166589 Query 26942 CTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||||||| ||||| ||||||||| | || |||||||| Sbjct 166588 TTATAACATCCAAAAGGAATCTACTCTTCACCTGGTCCT 166550 Score = 82.4 bits (90), Expect = 7e-11 Identities = 121/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||| || || | || ||| ||||| || || ||||| || ||||| ||||| Sbjct 154877 CGACACAATTGATAACGTAAAAGCCAAGATCCAAGATAAGGAAGGCATCCCTCCTGATCA 154818 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATA 26946 ||| | || || | || ||| |||||||||||||||| || ||| || || |||| Sbjct 154817 ACAGCGTCTGATCTTCGCCGGAAAACAACTCGAAGATGGCAG-GACGCTTGCAGATTATA 154759 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 | ||||| |||||||| ||| | ||| | || || || | || ||||| Sbjct 154758 ATATTCAGAAAGAATCAACTCTTCATTTAGTTCTCCGATTGAGGGGAGG 154710 Score = 82.4 bits (90), Expect = 7e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||| || || | || ||| ||||| ||||| ||||| || ||||| ||||| Sbjct 166474 CGACACAATTGATAACGTAAAAGCCAAGATCCAAGACAAGGAAGGCATCCCTCCTGATCA 166415 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||| | || || | || ||| |||||||||||||||| || | | | || ||||| Sbjct 166414 ACAGCGTCTGATCTTCGCCGGAAAACAACTCGAAGATGGCAGGACCCTTGCAGATTATAA 166355 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||| || || || || | ||||| || || | | |||||||| Sbjct 166354 CATTCAGAAGGAGTCGACCCTTCATCTAGTTCTTCGGTTGAGAGGAGG 166307 >seq25744 Length=1702523 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || | || ||| | || | ||||| Sbjct 948065 AAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATAACCCTAGAGGTTGAATCC 948124 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||| |||||||| | || || ||||| ||||| ||||| || || || || Sbjct 948125 TCCGATACCATCGACAATGTGAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCGGAC 948184 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG-AAACGTCAGCGACTA 26944 || ||| | || || | || || || ||||||||||| | | | || | | ||||| Sbjct 948185 CAGCAACGGCTAATCTTCGCAGGAAAGCAACTCGAAGACGGCCGTACACTTGCG-GACTA 948243 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || || || |||||| | |||||||| ||| || | |||||||| Sbjct 948244 CAACATCCAGAAGGAGTCTACTTTGCATCTGGTGCTGCGATTGAGAGGAGG 948294 >seq25716 Length=1210045 Score = 82.4 bits (90), Expect = 7e-11 Identities = 151/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATT--AGAATCAA 26826 |||||| | ||||| ||||| | ||||| || | || || | || | ||| | | Sbjct 962331 ATGCAAATCTTTGTGAAAACCCTCACTGGCAAGACAATTACACTGGAGGTTGAGAGTTCA 962390 Query 26827 ACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATC 26886 |||||||| || | ||||| |||||| ||||||||||| || || || |||| Sbjct 962391 --GACACCATTGACAATGTCAAGGCTAAGATTCAGGACAAAGAAGGTATTCCACCTGATC 962448 Query 26887 AACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG-AAACGTCAGC-GACTA 26944 | || || || || | || ||||| || || || |||| | | | || | || ||||| Sbjct 962449 AGCAGAGGCTGATATTCGCTGGCAAGCAGCTAGAGGATGGTCGTACACTT--GCTGACTA 962506 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| ||||||||||| ||||| | ||| |||| || Sbjct 962507 TAATATTCAAAAAGAGTCTACCCTTCATTTGGTGCT 962542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478508252757360