Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq25599 134 4e-26 seq25760 120 8e-22 seq24687 89.7 1e-12 seq25756 87.8 5e-12 >seq25599 Length=502261 Score = 134 bits (148), Expect = 4e-26 Identities = 165/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || ||| ||||||||| || |||||||| | ||| | |||||| ||||| | Sbjct 182117 ATGAAAGATGATAGCATCGAGGGCATATTTGACACTTTGAAGGAGTGTGCTGTTATTAGC 182176 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 ||| ||| || ||||||||| | || | || || |||||||| |||| ||||| || Sbjct 182177 AAGGTTGCTGGAGGAATTGGTCTTTCTGTGCATAACGTTCGTGCTACAGG-CAGTTTTAT 182235 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 | |||| ||| || | || ||||| | |||||||||||||| |||||| | | || Sbjct 182236 TTGCGGGACAAATGGGGAATCAAATGGTATTGTTCCCATGCTTCGAGTGTTTAATGACAC 182295 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCG 363843 ||| | ||||| || || || ||||||||| | || || ||| Sbjct 182296 TGCTCGCTACGTTGATCAAGGGGGAGGAAAGAGGAAGGGTGCG 182338 >seq25760 Length=3792821 Score = 120 bits (132), Expect = 8e-22 Identities = 347/522 (66%), Gaps = 19/522 (4%) Strand=Plus/Minus Query 22437 GAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGT--TCATTCGCGGAACGT 22494 ||| || || || ||||| |||||||||| || | || || || || || | Sbjct 708115 GAAGAAAGCGGAGTGGGCTTTGAAATGGATAGACG--GCTCGGAATCTTTTGCTGAGAGG 708058 Query 22495 CTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTT 22554 ||||||| || ||| |||||||| |||||||| |||||| || || || || ||| Sbjct 708057 ATTATTGCTTTCGCTTGTGTTGAAGGGATTTTCTTCTCTGGAAGTTTCTGCGCGATATTT 707998 Query 22555 TGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGA 22614 ||||| ||||| |||| | ||||||||||| || |||||||| |||||||| ||| Sbjct 707997 TGGCTTAAAAAGCGTGGGTTAATGCCGGGTCTGACATTTTCAAACGAGTTAATCTCACGA 707938 Query 22615 GATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCATAAA 22674 |||||||| | || |||||| |||||| || | || | || | | | | ||| Sbjct 707937 GATGAGGGCTTACACTGCGATTTCGCGTGTTTGATTTA---CAGTC-TGTTAAAGAAAAA 707882 Query 22675 CTTCCATATGAAAC---TGTACTTGATATTATTAC-AAATGCAGTTGAAC-TTGAACGTC 22729 || | | | | || | | | || | | | |||| | ||||| | || | Sbjct 707881 ATTGAGTGAGGAGCGCGTGAA---GGGAATAGTGCGAGATGC-GGTGAACATCGAGAGGG 707826 Query 22730 TATTTATTTGCGAGGCG-TTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGT 22788 ||| | || || ||| || | | || | | || || |||| || | ||||||| Sbjct 707825 AGTTTGTATGTGACGCGCTTCCTTGCGCGT-TGGTGGGGATGAATGGGGAGTTAATGAGT 707767 Query 22789 ACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTAT 22848 |||||| | ||||||||||| | | || | | || || | | ||| | ||| Sbjct 707766 CAGTATATTGAGTTTGTTGCAGACAGGTTGTTGGGTGCGCTTGGGTGCGGCAAGGAGTAT 707707 Query 22849 AACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTC 22908 || || ||||| ||||| |||||||| || ||| | |||| ||||| ||||| Sbjct 707706 AATGTGTCAAATCCTTTTGATTGGATGGAGCTGATTAGTTTACAAGGGAAGACTAATTTT 707647 Query 22909 TTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 || || || |||||||| || || || ||||| | ||||||| Sbjct 707646 TTTGAGAAGAGAGTTGGAGAGTATCAGAAAGCGGCTGTTATG 707605 >seq24687 Length=27406 Score = 89.7 bits (98), Expect = 1e-12 Identities = 155/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || ||| || || || || | ||| || || ||| | |||||| |||| | Sbjct 5257 ATGAAAGATGATAGTATTGAAGGCATTTATGATACTCTAAAGGAGTGTGCTGTTATCAGC 5198 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTG-CACAGAACAGTTACAT 363740 || || || ||||||||||| || || |||||| |||||| ||||| ||| || || Sbjct 5197 AAATCAGCTGGAGGAATTGGTGTCTCTATTCACAATATTCGTGCCACAG-GCAGCTATAT 5139 Query 363741 TCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATA 363799 ||| || || | |||| | || ||||| | ||||| ||| | | ||||| | ||| Sbjct 5138 TCGAGGAACAAATGGGACA-TCTAATGGTATTGTTCCAATGTTAAGGGTGTTCAATGATA 5080 Query 363800 CTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 |||| | || || || || || ||||| ||| | ||||| Sbjct 5079 CTGCCCGCTATGTTGATCAAGGAGGAGGCAAGAGGAAAGG 5040 >seq25756 Length=2696182 Score = 87.8 bits (96), Expect = 5e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 111694 TTATGTGCCAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTG 111753 |||| | ||||| |||||| ||||| | | ||||| ||||||||||||||||||| Sbjct 1309609 TTATTTTGCAGTTCTATGTAGCAAACGGGGAGTTATCATGTCAAATGTATCAGCGATCTG 1309550 Query 111754 CTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAA 111813 |||| || || || ||||| || || || |||||| ||| | || | || ||| ||| Sbjct 1309549 CTGACATGGGACTGGGTGTGCCATTCAACATTGCATCTTATGGTCTCTTGACATGCATAA 1309490 Query 111814 TCGCTCATTTT 111824 | |||||| || Sbjct 1309489 TTGCTCATGTT 1309479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302923378046666