Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq25310 129 5e-25 seq25706 122 7e-23 seq25716 102 7e-17 seq25337 84.2 2e-11 >seq25310 Length=177726 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| | || || || | || || | || |||||| | | Sbjct 154936 ATGCAAATCTTTGTCAAAACCCTCACCGGCAAGACCATAACTCTTGAGGTCGAGAGCTCC 154877 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || ||| ||||| || || |||||||| ||||| |||||| Sbjct 154876 GACACAATTGATAACGTAAAAGCCAAGATCCAAGATAAGGAAGGCATCCCTCCTGATCAA 154817 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||| | ||||| | || ||| || ||||||||||||| ||| ||| || |||||||| Sbjct 154816 CAGCGTCTGATCTTCGCCGGAAAACAACTCGAAGATGGCAG-GACGCTTGCAGATTATAA 154758 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| |||||||| || |||||||||| | ||||||| ||||| Sbjct 154757 TATTCAGAAAGAATCAACTCTTCATTTAGTTCTCCGATTGAGGGGAGG 154710 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | || || || | || || | || |||||| | | Sbjct 166533 ATGCAAATCTTTGTCAAGACCCTCACCGGCAAGACCATAACTCTTGAGGTCGAGAGCTCC 166474 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || ||| ||||| ||||| |||||||| ||||| |||||| Sbjct 166473 GACACAATTGATAACGTAAAAGCCAAGATCCAAGACAAGGAAGGCATCCCTCCTGATCAA 166414 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || ||| || ||||||||||||| ||| | | | ||||||||| Sbjct 166413 CAGCGTCTGATCTTCGCCGGAAAACAACTCGAAGATGGCAGGACCCTTGCAGATTATAAC 166354 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || || || || ||||| |||| | | ||||||||||| Sbjct 166353 ATTCAGAAGGAGTCGACCCTTCATCTAGTTCTTCGGTTGAGAGGAGG 166307 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23984 AAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA 24043 ||| || ||||| | ||||| ||||| ||||| || ||| | ||||| | || || || Sbjct 166768 AAAAAATATGCAGATCTTTGTCAAAACTTTAACCGGGAAAACAATTACTCTGGAGGTGGA 166709 Query 24044 GGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCC 24103 | | || |||||||| | || || ||||| ||||||||||| || || || Sbjct 166708 GAGCTCTGATACCATCGATAATGTGAAGGCCAAGATCCAAGACAAAGAAGGGATCCCACC 166649 Query 24104 CGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGA 24163 || ||||| || |||| | || ||| ||||| |||||||| | | | | | ||| Sbjct 166648 TGACCAACAAAGGTTGATCTTCGCCGGAAAGCAGCTCGAAGACGGCCGTACTTTGGCCGA 166589 Query 24164 TTATAACATTCAAAAAGAATCTACAATTCA 24193 ||||||||| ||||| |||||||| |||| Sbjct 166588 TTATAACATCCAAAAGGAATCTACTCTTCA 166559 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | || || || | || || |||| || ||| | Sbjct 154708 ATGCAAATCTTTGTGAAGACTCTGACGGGCAAGACCATAACTCTCGAGGTGGAGAGCTCT 154649 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | ||||| ||||| || || ||||| || || || ||||| Sbjct 154648 GACACGATCGATAACGTCAAGGCCAAGATCCAAGATAAGGAAGGTATCCCGCCTGATCAG 154589 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| || || | || ||| ||||| ||||| |||| || | || || |||||||| Sbjct 154588 CAGAGGCTAATCTTCGCCGGAAAGCAGCTCGAGGATGGAAGGA-CGCTTGCTGATTATAA 154530 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| |||||||| || || ||||| | || | |||||||||| || Sbjct 154529 CATCCAAAAAGAGTCAACCCTTCATCTGGTTCTCCGATTGAGAGGGGG 154482 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| ||||| || ||| | ||||| |||| || ||| Sbjct 155167 AATATGCAGATCTTCGTCAAAACCTTAACCGGTAAAACTATTACTCTCGAGGTGGAGAGT 155108 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 || |||||||| | ||||| ||||| | |||||||| || || || || Sbjct 155107 TCTGATACCATCGATAATGTCAAGGCCAAGATCCAAGGTAAAGAAGGAATTCCACCTGAC 155048 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 ||||| || |||| | || ||| |||||||||||||| | | | | | ||||||| Sbjct 155047 CAACAAAGGTTGATCTTCGCCGGAAAGCAACTCGAAGACGGCCGTACTTTGGCCGATTAT 154988 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||| || || || ||||| |||| |||| Sbjct 154987 AACATCCAGAAGGAGTCTACTCTTCACCTAGT 154956 >seq25706 Length=1095516 Score = 122 bits (134), Expect = 7e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || || || ||||| | |||||| | || || || || Sbjct 699377 ATGCAAATTTTTGTTAAGACCTTGACGGGAAAGACCATTACCTTGGAGGTAGAAAGCAGT 699318 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | ||||| |||||| ||||||||||| || || || ||||| Sbjct 699317 GACACAATCGATAATGTCAAGGCGAAGATTCAAGACAAAGAAGGGATTCCACCAGATCAG 699258 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| |||||| || || ||||| || ||||||| || | | | || |||||||| Sbjct 699257 CAGAGGTTGATTTTCGCAGGAAAGCAGCTTGAAGATGGAAGGA-CTTTGGCTGATTATAA 699199 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAG 24205 |||||| || ||||| ||| |||| | |||||||| Sbjct 699198 CATTCAGAAGGAATCAACACTTCACCTTGTGTTAAG 699163 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| || || ||||| | ||||| | ||||| ||| || | Sbjct 699605 ATGCAGATCTTCGTCAAAACCTTGACGGGAAAGACCATTACTCTTGAAGTTGAGAGCAGC 699546 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | ||||| ||||||| ||||||||||| || || || ||||| Sbjct 699545 GACACTATTGATAATGTCAAGGCAAAGATTCAGGACAAAGAAGGAATTCCCCCAGATCAG 699486 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 || || || || | | || || || || ||||||| | || | || |||||||| Sbjct 699485 CAAAGGCTAATCTTTGCTGGAAAACAGCTTGAAGATGGGCG-TACTTTGGCTGATTATAA 699427 Query 24170 CATTCAAAAAGAATCTACAATTCA 24193 || || |||||||| ||| |||| Sbjct 699426 TATCCAGAAAGAATCAACACTTCA 699403 >seq25716 Length=1210045 Score = 102 bits (112), Expect = 7e-17 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| | ||||| || | ||||| | || || ||| Sbjct 962331 ATGCAAATCTTTGTGAAAACCCTCACTGGCAAGACAATTACACTGGAGGTTGAGAGTTCA 962390 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| |||||| ||||||||||| || || || ||||| Sbjct 962391 GACACCATTGACAATGTCAAGGCTAAGATTCAGGACAAAGAAGGTATTCCACCTGATCAG 962450 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAACGTCAGC-GATTATA 24168 ||||| ||||| | || |||||||| || || ||| | | | || | || || |||| Sbjct 962451 CAGAGGCTGATATTCGCTGGCAAGCAGCTAGAGGATGGTCGTACACTT--GCTGACTATA 962508 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 | ||||||||||| ||||| ||||||| ||| Sbjct 962509 ATATTCAAAAAGAGTCTACCCTTCATTTGGTG 962540 >seq25337 Length=191068 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | || || ||||| ||||||| || | || || |||| || ||| Sbjct 88927 CAAGATGCAGATATTCGTGAAAACCCTAACTGGGAAGACAATAACTCTCGAGGTAGAGAG 88986 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || || |||||||| | ||||| ||||| |||||||||||||| || || || Sbjct 88987 CAGTGATACCATCGACAATGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCACCTGA 89046 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATT 24165 || ||| | |||| | || || |||||||| ||||||| || ||| | || |||| Sbjct 89047 CCAGCAGCGCTTGATCTTCGCTGGAAAGCAACTTGAAGATGGTAG-AACTTTGGCTGATT 89105 Query 24166 ATAACATTCAAAAAG 24180 | || || || |||| Sbjct 89106 ACAATATCCAGAAAG 89120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429801005873265