Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_007497.1 Length=44856 Score E Sequences producing significant alignments: (Bits) Value seq19218 300 4e-77 seq16533 105 2e-18 >seq19218 Length=1468 Score = 300 bits (332), Expect = 4e-77 Identities = 421/588 (72%), Gaps = 12/588 (2%) Strand=Plus/Plus Query 39219 TGGCGGCGACCTTCATCGCGCGCATCGGCTCCGGATTCAGCAGGCCGCCGCCGACGCGCT 39278 ||||||||| ||||| ||| ||||||| || ||| ||| | |||||||||||||||| Sbjct 885 TGGCGGCGATCTTCAGCGCCCGCATCGACTGCGGGTTCTTGACCCCGCCGCCGACGCGCT 944 Query 39279 TCGTCGTGTAGAACAGTACGTACGGCTTCGCCGTGTACGGATCGCGCAGCACGCGAACCC 39338 | || |||||||| ||| | ||||| ||||| || |||||||| ||||| | | Sbjct 945 TGGTGACGTAGAACATCACGAAGGGCTTGTTGGTGTAGGGGTCGCGCAGGACGCGGATGC 1004 Query 39339 CGATGCGGTCGATGATCAGATACGTCTGCTGGAAGTCGCCGAAGAGAATCGGCGTCGA-- 39396 ||||||||||||||| ||| || || | | | ||||||| |||| |||| ||| Sbjct 1005 CGATGCGGTCGATGACCAGGTAGGTTTCGCGCATGTCGCCGTAGAG----GGCGGCGATG 1060 Query 39397 --GTTCGCCGCCACATCCGGCATGTCCGGCACCTCGGTAACCGGATAGCCCGCCAGCGTC 39454 || ||||| || | |||||||| ||| ||| || | | ||||||||||||| Sbjct 1061 TTGTCGGCCGCGACGTTGGGCATGTCAGGCGTATCGACCACGGCCTCGCCCGCCAGCGTC 1120 Query 39455 GCCGGCTGCCCCGCTACGTACGACGGTTGCCAGAGATAGTTCCCTTGGCCGTCCTTCAGC 39514 |||||||| || || | | ||||| ||||| || ||||| ||||||||||||||| Sbjct 1121 GCCGGCTGGCCGGCCTGGAAGGACGGCTGCCACAGGTAGTTGTTCTGGCCGTCCTTCAGC 1180 Query 39515 TTCCGCACCTGACGCTGCGTGTTGCGGTTCATCGCGAAGCGGGCGTTGCCCGTGAACGCG 39574 ||| ||| |||||| | ||||||||| ||| ||||||| ||| | ||| Sbjct 1181 AGGCGCGCCTTCGACTGCGTCTGGCGGTTCATGAAGAACTTGGCGTTGGCCGAGTGCGCC 1240 Query 39575 CTCGGCAGGTCGTAGACCAGATC--GATGATGCCGTCCGACGTGATGTCTGCCGCCGCAC 39632 | ||||| ||||||| |||| |||||||||||| || | | | ||||| | Sbjct 1241 TTGGGCAGATCGTAGA--TGATCGAGATGATGCCGTCGCCGGTCAGCGCGCCAGCCGCCC 1298 Query 39633 CGCTGTTCACGACTTCGATGGCGCCGAACGGGTGCTTCGCGGCATTGGCACCGCCCGCGA 39692 | ||||||||| |||||||| |||||||||| ||||| ||||| |||| | | Sbjct 1299 CCGAGTTCACGACGGTGATGGCGCTCCACGGGTGCTTGGCGGCGTTGGCGGCGCCGGTCA 1358 Query 39693 TGTACGTAAGCAGCCCGTTCGGCTTGTTCGTGCCGTCGCCAGCGAGGAACGCTTTGCCTT 39752 ||| || || | ||| ||||||||| ||||||| ||| | |||||||| || | | Sbjct 1359 CGTAGGTCAGGATGCCGAACGGCTTGTTGGTGCCGTTGCCCGAAAGGAACGCGATGGCCT 1418 Query 39753 CCTGCTTGGCGAACTCGGTCTGCACTTCGGTCGCGAGCCACGACTCGA 39800 |||| |||||||||| || | |||| || ||||| | ||||| Sbjct 1419 CCTGACGCGCGAACTCGGGCTCGATTTCGTTCTGCAGCCAGGCCTCGA 1466 >seq16533 Length=1266 Score = 105 bits (116), Expect = 2e-18 Identities = 440/674 (65%), Gaps = 33/674 (5%) Strand=Plus/Plus Query 43232 AGCCCCAATAAGTCGTCAAGGCCGCCGCCATCGATACCAGCGGCGATCACCTCACATT-- 43289 ||||||| |||||||| |||||||||||||| | || | | | |||||| || | Sbjct 601 AGCCCCAGCAAGTCGTCCAGGCCGCCGCCATCAAGGCCCACCACCACCACCTCGCACTCG 660 Query 43290 -GTTCGATCAGGTCGAGAAGCGTCACGCGCTCCGGCAACCCTGCATTGATCC-AGAAGTC 43347 | | ||| || ||||||||| | | ||| |||| || || ||| ||||||| Sbjct 661 CGCTTGATGTACTC---AAGCGTCACCC--TGCGGTCACCCCGC--TGCTCCCAGAAGTC 713 Query 43348 TGCGCCGGCCCACCGGTCGGACCGGAGGTTCATGCCGATCTCGACGTTGAGGTGCTTCGC 43407 || || ||||| ||||||| ||| | |||||||||||||||||| || |||||||| || Sbjct 714 GGCTCCTGCCCAGCGGTCGGCCCGCATGTTCATGCCGATCTCGACATTCAGGTGCTTGGC 773 Query 43408 GATGAACTGCT--GGAACGATC-CGTCAGTCTTGGTGCGGATCT---TGTTGAGCTGGT- 43460 |||| || | | ||| || | || || |||| || ||| | ||||| Sbjct 774 CCAAAACTCCTTCAGCCCAATCTCGCCCTTCATG--GCGG-CCTGGCTGTGCAACTGGTG 830 Query 43461 CCTCCAGCCATTCGGCACTGACCGACCGCCCGAGATTCGGATTCGTGATGTAGTAGTTGG 43520 ||| || | ||| ||| ||| | ||||||||| || | |||| || | Sbjct 831 GATCCGCTCAATGTCCACGGACGCACCCC----AATTCGGATTGGTCACGTAGGCATTTG 886 Query 43521 CCGGATCGAGGTAGGCTTTCGACTTCACCATCTCTTCCGGAAACTCGTACAGCA-CGCCG 43579 || |||| | ||| | ||||| ||| | ||||| || || | || || | Sbjct 887 CCAGATCCTTATGGGCGCCAGCCTTCAACATGGGCTTGGGAAATTCATAGATCAGCGGC- 945 Query 43580 AGCGACTTCCGGTCGACGATTTTGCCGTCACGCACGTCGCGGTAGTACTGC-AACTTCTC 43638 || ||||| | || |||| | ||||| ||||| | ||| ||| ||| | ||| || Sbjct 946 AGGAACTTCTGATCCTCGATCTCCCCGTCGCGCACACCTCGGGCGTA-TGCGAGCTTGTC 1004 Query 43639 TTTGAACACACCGGCCGGCGGCTCGTCGCTTTGCGTTGTCAGGATGATGACCCACCCTTC 43698 |||||||| ||||| || ||||| || ||||| ||| | ||| || | || || Sbjct 1005 CTTGAACACGCCGGCAGGAGGCTCCTCCGACTGCGTGGTCGCGTAGATCACAAAGCCCTC 1064 Query 43699 ATCCCGCGACACCTGGCCTCCGGTCGCCTCCATGAACATCGCTTCTGCGTTCGCCC--TC 43756 |||||| | |||| || || ||||||| | ||| | || | | ||||| || Sbjct 1065 GGGCCGCGATGCGAGGCCGCCCGTGGCCTCCAGCAGCAT-GTTTGAG-GCCCGCCCCTTC 1122 Query 43757 TTGCCGAAGACCCAGTGCTCGTCGATAAGAATCTTTCCTGACTTCTTGCCCGATACCGTG 43816 ||||| || | ||||||| | || | | | ||| ||||| | |||||| Sbjct 1123 TTGCCAAATTCGTGCAGCTCGTCCACAAAGACAAAGCTGGCCTTTTTGCCTGCGACCGTG 1182 Query 43817 TCAGTGTCGGCCGCAACCACCTTCAACGACGCTCGACTGACGCGGTGCGTTATCGTGCGG 43876 | |||||| || |||||||| | |||| | || | |||||| | | |||| Sbjct 1183 GCCTCGTCGGCTGCCACCACCTTGAGGAACGCCCCCGTGTCCTTGTGCGTGACCAGGCGG 1242 Query 43877 ATGTGATCTTGGAC 43890 || ||| ||||| Sbjct 1243 TGGTAATCCTGGAC 1256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143373723446908