Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq25706 98.7 8e-16 seq25310 98.7 8e-16 seq25319 84.2 2e-11 seq25634 82.4 6e-11 >seq25706 Length=1095516 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| |||||||| || || | || ||||| || ||||| | || |||| ||| Sbjct 699149 ATGCAGATTTTTGTTAAGACTTTGACTGGAAAGACTATTACTTTGGAGGTGGAGAGTAGC 699090 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || ||| ||| | || || || ||| ||||| ||||| | || ||||||| Sbjct 699089 GATACTATTGATAATGTTAAGGCTAAGATTCAGGATAAGGAAGGGATTCCTCCTGATCAG 699030 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || ||| | |||| ||| || || ||| | ||||||| | ||| |||| |||||||| Sbjct 699029 CAGAGATTGATTTTTGCTGGGAAGCAACTTGAAGATGGAAGGACCTTGGCTGATTATAAT 698970 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || || |||||||||||| | || | || ||| | |||| || || Sbjct 698969 ATCCAGAAAGAGTCTACTCTTCACCTTGTCTTGCGTCTGCGCGGTGG 698923 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || |||||||| | |||||||| |||||||| | ||| ||| |||| Sbjct 699605 ATGCAGATCTTCGTCAAAACCTTGACGGGAAAGACCATTACTCTTGAAGTTGAGAGCAGC 699546 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 |||||| ||| | || || ||| ||| || |||||||| | ||| |||||| Sbjct 699545 GACACTATTGATAATGTCAAGGCAAAGATTCAGGACAAAGAAGGAATTCCCCCAGATCAG 699486 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||||| || || | ||| || ||||| | ||||||| || |||| |||||||| Sbjct 699485 CAAAGGCTAATCTTTGCTGGAAAACAGCTTGAAGATGGGCGTACTTTGGCTGATTATAAT 699426 Query 115466 ATTCAAAAAGAGTCTAC 115482 || || ||||| || || Sbjct 699425 ATCCAGAAAGAATCAAC 699409 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||| || ||||| ||||| ||||| ||||| || | || |||| |||| Sbjct 699833 ATGCAGATTTTCGTGAAAACCCTCACAGGAAAGACCATCACTCTGGAGGTGGAGAGCAGC 699774 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | |||| || ||| ||||| || || ||||| |||| || || Sbjct 699773 GACACAATAG-ACAACGTGAAAGCCAAAATCCAAGACAAGGAAGGAATCCCACCAGACCA 699715 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||| | || || | || || ||||| | ||||| | | ||| | ||||||||||| Sbjct 699714 GCAACGTCTCATCTTCGCAGGAAAACAGCTCGAAGACGGCCGCACCTTAGCCGATTATAA 699655 Query 115465 CATTCAAAAAGAGTCTAC 115482 |||||||||||| || || Sbjct 699654 CATTCAAAAAGAATCAAC 699637 >seq25310 Length=177726 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||||||||| ||||| || || ||||| || | || ||| | | Sbjct 154936 ATGCAAATCTTTGTCAAAACCCTCACCGGCAAGACCATAACTCTTGAGGTCGAGAGCTCC 154877 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | |||||| || || ||||| |||||| |||| |||||| Sbjct 154876 GACACAATTGATAACGTAAAAGCCAAGATCCAAGATAAGGAAGGCATCCCTCCTGATCAA 154817 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || | || || | || || |||||| | ||||||| || || | || |||||||| Sbjct 154816 CAGCGTCTGATCTTCGCCGGAAAACAACTCGAAGATGGCAGGACGCTTGCAGATTATAAT 154757 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||| ||||| || ||| | ||| | || | ||||| | ||||| Sbjct 154756 ATTCAGAAAGAATCAACTCTTCATTTAGTTCTCCGATTGAGGGGAGG 154710 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| |||||||| || ||||| || || ||||| || | || ||| | | Sbjct 166533 ATGCAAATCTTTGTCAAGACCCTCACCGGCAAGACCATAACTCTTGAGGTCGAGAGCTCC 166474 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | |||||| || || || || |||||| |||| |||||| Sbjct 166473 GACACAATTGATAACGTAAAAGCCAAGATCCAAGACAAGGAAGGCATCCCTCCTGATCAA 166414 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || | || || | || || |||||| | ||||||| || ||| | || ||||||||| Sbjct 166413 CAGCGTCTGATCTTCGCCGGAAAACAACTCGAAGATGGCAGGACCCTTGCAGATTATAAC 166354 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||| || ||||| || | ||| | || | | ||| ||||||| Sbjct 166353 ATTCAGAAGGAGTCGACCCTTCATCTAGTTCTTCGGTTGAGAGGAGG 166307 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| || || || || || || ||||| ||| | ||| || | Sbjct 166305 ATGCAGATCTTTGTGAAGACCCTTACCGGCAAGACCATAACCCTTGAAGTTGAAAGCTCG 166246 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | || ||| || ||| ||||| ||||| |||| ||||||| Sbjct 166245 GATACGATTGATAACGTGAAAGCGAAGATTCAAGATAAGGAAGGGATCCCACCTGATCAG 166186 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || || || | ||| || || || ||||| |||| | ||| | |||||||||||| Sbjct 166185 CAGAGGCTCATCTTTGCTGGGAAGCAGTTAGAGGATGGAAGGACCCTCGCCGATTATAAC 166126 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || || || ||||| ||| | ||| | ||| | || |||| || || Sbjct 166125 ATCCAGAAGGAGTCCACTCTCCATCTTGTGCTCAGGCTGCGCGGTGG 166079 >seq25319 Length=181645 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| || || ||||| || || || |||||| | ||| ||| | Sbjct 59037 ATGCAAATTTTTGTGAAGACCCTCACTGGCAAGACTATTACCTTGGAAGTTGAGAGCTCG 59096 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||||| || ||||| || || || ||| || || ||||| | ||| || || Sbjct 59097 GACACTATT-GACAATGTTAAGGCCAAGATTCAGGACAAGGAAGGTATTCCCCCAGACCA 59155 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || || || | ||| |||||||| | || |||| | ||| | ||||| || || Sbjct 59156 GCAGAGGCTCATCTTTGCTGGCAAACAGCTGGAGGATGGCCGTACCCTCGCCGACTACAA 59215 Query 115465 CATTCAAAAAGAGTCTAC 115482 |||||| || ||||| || Sbjct 59216 CATTCAGAAGGAGTCCAC 59233 >seq25634 Length=602113 Score = 82.4 bits (90), Expect = 6e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| || ||||| || || || || || || ||| | || || | Sbjct 348322 ATGCAAATTTTCGTGAAAACCCTAACTGGCAAGACTATCACCCTTGAGGTAGAAAGCTCA 348381 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||||| ||| |||| |||||| || ||| || || || || | ||| || || Sbjct 348382 GACACTATTG-ACAATGTAAAAGCTAAGATTCAAGACAAGGAGGGTATTCCCCCGGACCA 348440 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||||||||| |||| ||| ||||| || | || |||| ||| | || |||||||| Sbjct 348441 GCAAAGACTGATTTTTGCTGGCAAGCAGCTTGAGGATGGACGCACCCTTGCTGATTATAA 348500 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATT 115503 ||| ||||| || || ||| | || ||||| | |||| Sbjct 348501 CATCCAAAAGGAATCAACTCTCCACTTGGTGCTCCGATT 348539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425210447699560