Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq25744 129 6e-25 seq25706 123 2e-23 seq25716 118 1e-21 seq25310 98.7 9e-16 seq25319 89.7 5e-13 seq25337 82.4 7e-11 >seq25744 Length=1702523 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | ||| |||||||| | ||| | || |||||||| || |||||||| || | | Sbjct 948294 CCTCCTCTCAATCGCAGCACCAGATGCAAAGTAGACTCCTTCTGGATGTTGTAGTC-CGC 948236 Query 131068 ATG-GTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | | || || ||| || || ||||| |||||| |||||| || ||||||||||| || Sbjct 948235 AAGTGTACGGCCGTCTTCGAGTTGCTTTCCTGCGAAGATTAGCCGTTGCTGGTCCGGTGG 948176 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| ||| || ||| | | || | ||||||| ||| || | Sbjct 948175 GATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTGTCGATGGTATCGGAGGATTCAAC 948116 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| ||||| ||||| ||||| ||||| |||||||| Sbjct 948115 CTCTAGGGTTATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 948068 >seq25706 Length=1095516 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||| | ||| || || | || | ||| || || ||||||||||| |||||| Sbjct 699606 GCCACCGCGGAGACGGAGGACAAGGTGGAGGGTTGATTCTTTTTGAATGTTATAATCGGC 699665 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| ||| || ||||| || |||||| |||| | ||| |||||||| || || Sbjct 699666 TAAGGTGCGGCCGTCTTCGAGCTGTTTTCCTGCGAAGATGAGACGTTGCTGGTCTGGTGG 699725 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||||||||| ||||| |||||| || | | || | || ||| || ||| | Sbjct 699726 GATTCCTTCCTTGTCTTGGATTTTGGCTTTCACGTTGTCTATTGTGTCGCTGCTCTCCAC 699785 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || || ||||| |||||||||||||| Sbjct 699786 CTCCAGAGTGATGGTCTTTCCTGTGAGGGTTTTCACGAAAATCTGCAT 699833 >seq25716 Length=1210045 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| ||||| | ||| | ||| || ||||||||||| ||||| || Sbjct 963014 GCCACCACGGAGACGGAGCACCAGATGAAGGGTTGATTCCTTTTGAATATTGTAGTCCGC 962955 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||||| |||||||||||||| || || | || | | ||||||||| || || Sbjct 962954 AAGGGTGCGCCCATCCTCTAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCAGGTGG 962895 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||||||||| ||| || ||||| | || | ||| || | | ||| | Sbjct 962894 GATACCTTCTTTGTCCTGGATCTTAGCCTTGACATTGTCAATAGTGTCAGAGCTCTCAAC 962835 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || ||||| || |||||||| || || || ||||| Sbjct 962834 CTCCAGGGTGATTGTCTTACCAGTGAGAGTTTTCACAAAGATTTGCAT 962787 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | || ||||| ||||| | ||| ||||| |||||||| || || || Sbjct 962558 GCCACCACGGAGGCGGAGCACCAAATGAAGGGTAGACTCTTTTTGAATATTATAGTCAGC 962499 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || ||||||||||||||||| ||| | || | | |||||| || || || Sbjct 962498 AAGTGTACGACCATCCTCTAGCTGCTTGCCAGCGAATATCAGCCTCTGCTGATCAGGTGG 962439 Query 131127 GATTCCTTCTTTGTC 131141 || ||||||||||| Sbjct 962438 AATACCTTCTTTGTC 962424 >seq25310 Length=177726 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || |||| || | || |||||||| || ||||| |||||| | Sbjct 154938 CCGCCACGGAGACGGAGAACTAGGTGAAGAGTAGACTCCTTCTGGATGTTATAATCGGCC 154997 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| || || ||||| || ||| |||| || | || ||||| || || Sbjct 154998 AAAGTACGGCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAACCTTTGTTGGTCAGGTGGA 155057 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||||||||| | ||| || ||||| | || | ||||| | ||| | Sbjct 155058 ATTCCTTCTTTACCTTGGATCTTGGCCTTGACATTATCGATGGTATCAGAACTCTCCACC 155117 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| |||| ||||||||||||| ||||| ||||| |||||||| Sbjct 155118 TCGAGAGTAATAGTTTTACCGGTTAAGGTTTTGACGAAGATCTGCAT 155164 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || || |||||||| ||||| |||||| || || || ||| || |||||||| || Sbjct 166565 GTAGATTCCTTTTGGATGTTATAATCGGCCAAAGTACGGCCGTCTTCGAGCTGCTTTCCG 166624 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| |||| || | || ||||| || ||||| ||||||||||| ||| || ||| Sbjct 166625 GCGAAGATCAACCTTTGTTGGTCAGGTGGGATCCCTTCTTTGTCTTGGATCTTGGCCTTC 166684 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | ||||| | | ||| | || | |||| ||||| ||||||| |||| Sbjct 166685 ACATTATCGATGGTATCAGAGCTCTCCACCTCCAGAGTAATTGTTTTCCCGGTTAAAGTT 166744 Query 131218 TTTACGAAAATCTGCAT 131234 || || || |||||||| Sbjct 166745 TTGACAAAGATCTGCAT 166761 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| ||||| | ||| | ||| ||||| || ||||| || |||||| | Sbjct 154254 CCACCGCGAAGACGGAGCACAAGATGGAGGGTGGACTCTTTCTGAATATTATAATCGGCC 154313 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||||| |||||| ||||| | || | | |||||| || || || Sbjct 154314 AGAGTACGTCCATCCTCTAACTGCTTCCCTGCAAATATCAGCCTCTGCTGATCAGGTGGA 154373 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || ||| || ||| | | || | ||||| | | |||| Sbjct 154374 ATCCCCTCCTTATCTTGGATCTTGGCCTTCACATTATCAATCGTATCAGAGCTTTCGACC 154433 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| || ||||| ||||||||||| || ||||||||| Sbjct 154434 TCTAGAGTTATGGTCTTGCCGGTGAGAGTTTTTACAAAGATCTGCATG 154481 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | ||| || || |||| ||| | |||||||||||| |||||||| ||||| Sbjct 166307 CCTCCTCTCAACCGAAGAACTAGATGAAGGGTCGACTCCTTCTGAATGTTATAATCTGCA 166366 Query 131068 ATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| | || | || || || || || || ||| |||| | |||||| || || ||||| Sbjct 166367 AGGGTCCTGCCA-TCTTCGAGTTGTTTTCCGGCGAAGATCAGACGCTGTTGATCAGGAGG 166425 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| ||| || || | | || | || |||| | ||||| Sbjct 166426 GATGCCTTCCTTGTCTTGGATCTTGGCTTTTACGTTATCAATTGTGTCGGAGCTCTCGAC 166485 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || ||||| || || || || || || ||||| Sbjct 166486 CTCAAGAGTTATGGTCTTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 166533 >seq25319 Length=181645 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | | ||| || || || || | ||| |||||||| ||||||||||| || Sbjct 59035 CCACCTCTAAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGCG 58976 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| ||||| ||||| || |||| | | ||||||||| || ||| Sbjct 58975 AGGGTACGGCCATCCTCCAGCTGTTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 58916 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 ||||| || ||||| || | | |||| | | | || | || || | | ||| | Sbjct 58915 ATTCCCTCCTTGTC-CTGTATCTTGGCTTTAACATTGTCAATTGTGTCTGAGCTCTCAAC 58857 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| || || || || ||||| || || ||||||||||| Sbjct 58856 CTCTAAGGTAATAGTCTTGCCAGTGAGAGTCTTCACAAAAATCTGCAT 58809 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | | ||| || || || || | ||| |||||||| ||||||||||| ||| Sbjct 59263 CCACCTCTGAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCG 59204 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| ||||| ||||| || |||| | | ||||||||| || || Sbjct 59203 AGGGTACGGCCATCCTCCAGCTGTTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGA 59144 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || || ||| | | || | ||| || | | ||| | Sbjct 59143 ATACCTTCCTTGTCCTGAATCTTGGCCTTAACATTGTCAATAGTGTCCGAGCTCTCAACT 59084 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| || || || || || || || || ||||| ||||| Sbjct 59083 TCCAAGGTAATAGTCTTGCCAGTGAGGGTCTTCACAAAAATTTGCAT 59037 >seq25337 Length=191068 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || || ||||| || ||| |||| || ||||||||||| || || || ||||||||| Sbjct 89085 TCTTCAAGTTGCTTTCCAGCGAAGATCAAGCGCTGCTGGTCAGGTGGAATGCCTTCTTTG 89026 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||||| | || | ||||| || ||| | |||| || | Sbjct 89025 TCCTGGATCTTGGCCTTGACATTGTCGATGGTATCACTGCTCTCTACCTCGAGAGTTATT 88966 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || ||||| ||||| ||||| |||||||| Sbjct 88965 GTCTTCCCAGTTAGGGTTTTCACGAATATCTGCAT 88931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471860794177920