Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq25319 95.1 1e-14 seq25744 82.4 6e-11 >seq25319 Length=181645 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || |||||||||||||| | ||| | | ||| Sbjct 59248 AGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTACGGCCATCC 59189 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| |||||||| ||| | || |||| ||| ||||| || | || || ||||| Sbjct 59188 TCCAGCTGTTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCC 59129 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | ||| || | | | | |||||| | ||| ||||| ||| || || Sbjct 59128 TGAATCTTGGCCTTAACATTGTCAATAGTGTCCGAGCTCTCAACTTCCAAGGTAATAGTC 59069 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || || || || |||||||| ||||| Sbjct 59068 TTGCCAGTGAGGGTCTTCACAAAAATTTGCAT 59037 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | |||| || |||||||| || |||||||| || ||| Sbjct 59947 CCACCACGGAGACGCAGGACAAGGTGCAATGTAGACTCCTTCTGGATGTTGTAATCTGCC 59888 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | | ||||||||||| || || ||| | || |||| || |||||| || Sbjct 59887 AGGGTTCGGCCATCCTCCAATTGCTTCCCAGCAAAGATCAGCCTTTGCTGGTCCGGTGGA 59828 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || || ||||| |||| |||||| | | | | || || | ||| | Sbjct 59827 ATCCCTTCCTTGTCCTGGATTTTAGCCTTCACATTGTCAATGGTATCTGAGCTCTCAACT 59768 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||| ||||| || ||||| || |||||||| || ||||| Sbjct 59767 TCAAGAGTGATAGTTTTCCCAGTCAGAGTCTTGACAAATATTTGCAT 59721 >seq25744 Length=1702523 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/233 (68%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||||| | | ||| |||| ||||| || |||||||| || ||||||||||| || Sbjct 948295 CCCTCCTCTCAATCGCAGCACCAGATGCAAAGTAGACTCCTTCTGGATGTTGTAGTCCGC 948236 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | || | |||| || | ||| || || || | || ||||| || |||||| || Sbjct 948235 AAGTGTACGGCCGTCTTCGAGTTGCTTTCCTGCGAAGATTAGCCGTTGCTGGTCCGGTGG 948176 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||| || ||||| || || || |||||| | | | | || ||| || || Sbjct 948175 GATGCCTTCCTTGTCTTGGATCTTGGC--CTTCACATTGTCGATGGTATCGGAGGATTCA 948118 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || | ||| ||||| || || || || ||||| || || |||||||| || Sbjct 948117 ACCTCTAGGGTTATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 948065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404960807811370