Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq25310 132 4e-26 seq25716 129 5e-25 seq25634 114 1e-20 seq25319 113 4e-20 seq25706 109 5e-19 seq25682 102 7e-17 seq25337 89.7 4e-13 >seq25310 Length=177726 Score = 132 bits (146), Expect = 4e-26 Identities = 161/214 (75%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| ||||| || ||||| ||||| || || |||| ||| | ||||||||| || Sbjct 166077 ATGCAGATATTCGTGAAGACATTGACAGGGAAGACCATAACACTGGAAGTGGAGAGCTCG 166018 Query 25059 GACACTATCGAGTCAC-TGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || | || |||| ||||||| ||| || || || |||||||||||||| | Sbjct 166017 GACACAATTGA-TAACGTGAAAGCAAAAATTCAA-GATAAGGAGGGGATTCCACCTGATC 165960 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || | || ||||| || || || || || |||| || || | | ||||||| Sbjct 165959 AGCAGAGGCTGATATTTGCAGGGAAGCAGTTGGAGGATGGGCGTACGCTTGCTGATTACA 165900 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||| ||||| ||||| || ||| | ||||| Sbjct 165899 ATATTCAGAAAGAGTCCACACTCCATCTTGTGCT 165866 Score = 118 bits (130), Expect = 9e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || ||||| ||||| ||| | || || | || |||||| ||| Sbjct 166761 ATGCAGATCTTTGTCAAAACTTTAACCGGGAAAACAATTACTCTGGAGGTGGAGAGCTCT 166702 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || ||||| ||||| || ||| |||||||||||||| |||||||||||| Sbjct 166701 GATACCATCGATAATGTGAAGGCCAAGATCCAAGACAAAGAAGGGATCCCACCTGACCAA 166642 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || || ||||| || || | ||||| | || ||| ||| |||||| || Sbjct 166641 CAAAGGTTGATCTTCGCCGGAAAGCAGCTCGAAGACGGCCGTACTTTGGCCGATTATAAC 166582 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || ||||| ||||| || || || Sbjct 166581 ATCCAAAAGGAATCTACTCTTCA 166559 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||||||| ||| | ||||| || |||| || | || || || ||| Sbjct 154480 ATGCAGATCTTTGTAAAAACTCTCACCGGCAAGACCATAACTCTAGAGGTCGAAAGCTCT 154421 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || || ||||| || ||| || || || |||||||||||||| || Sbjct 154420 GATACGATTGATAATGTGAAGGCCAAGATCCAAGATAAGGAGGGGATTCCACCTGATCAG 154361 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| || || || ||||| |||| || ||| ||| |||||| ||| Sbjct 154360 CAGAGGCTGATATTTGCAGGGAAGCAGTTAGAGGATGGACGTACTCTGGCCGATTATAAT 154301 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| ||||| ||||| || ||| | ||||| Sbjct 154300 ATTCAGAAAGAGTCCACCCTCCATCTTGTGCT 154269 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || || ||||||||| | || || |||| |||||| ||| Sbjct 155164 ATGCAGATCTTCGTCAAAACCTTAACCGGTAAAACTATTACTCTCGAGGTGGAGAGTTCT 155105 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || ||||| | ||| || ||| | |||||||| ||||||||||||||| Sbjct 155104 GATACCATCGATAATGTCAAGGCCAAGATCCAAGGTAAAGAAGGAATTCCACCTGACCAA 155045 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || || ||||| || ||| | ||||| | || ||| ||| |||||| || Sbjct 155044 CAAAGGTTGATCTTCGCCGGAAAGCAACTCGAAGACGGCCGTACTTTGGCCGATTATAAC 154985 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || |||| || Sbjct 154984 ATCCAGAAGGAGTCTACTCTTCACCTAGTTCT 154953 >seq25716 Length=1210045 Score = 129 bits (142), Expect = 5e-25 Identities = 158/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || ||| | || ||||| | ||||| | || || ||| ||| Sbjct 962787 ATGCAAATCTTTGTGAAAACTCTCACTGGTAAGACAATCACCCTGGAGGTTGAGAGCTCT 962846 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||||| || || || ||| || ||| ||||||||||| || |||||||||| Sbjct 962847 GACACTATTGA--CAATGTCAAGGCTAAGATCCAGGACAAAGAAGGTATCCCACCTGACC 962904 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || | |||||||| || || || |||| |||| ||||| | | || |||| Sbjct 962905 AGCAGAGGCTGATTTTTGCTGGTAAGCAGCTAGAGGATGGGCGCACCCTTGCGGACTACA 962964 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||||| ||||| || || ||| | ||||| Sbjct 962965 ATATTCAAAAGGAATCAACCCTTCATCTGGTGCT 962998 Score = 105 bits (116), Expect = 6e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || | || || || | || ||| | || || ||| || Sbjct 962331 ATGCAAATCTTTGTGAAAACCCTCACTGGCAAGACAATTACACTGGAGGTTGAGAGTTCA 962390 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || || | || || | ||| ||||||||||| ||||||||||| Sbjct 962391 GACACCATTGA--CAATGTCAAGGCTAAGATTCAG-GACAAAGAAGGTATTCCACCTGAT 962447 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || || || ||||| || |||| |||| ||| || | | || || Sbjct 962448 CAGCAGAGGCTGATATTCGCTGGCAAGCAGCTAGAGGATGGTCGTACACTTGCTGACTAT 962507 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||||||||| || || || ||||| ||||| Sbjct 962508 AATATTCAAAAAGAGTCTACCCTTCATTTGGTGCT 962542 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/219 (70%), Gaps = 5/219 (2%) Strand=Plus/Plus Query 24995 AACA-ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 |||| ||||| || || |||||||| | || || ||| | ||||| | || ||||| Sbjct 962098 AACAGATGCAGATCTTCGTAAAGACACTAACTGGCAAAACTATCACCCTTGAGGTGGAAA 962157 Query 25054 CGTCTGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 |||||||| || || || || ||| || ||| || ||||| || || || || Sbjct 962158 GCTCTGACACCATTGA--CAATGTCAAGGCTAAGATCCAAGATAAAGAGGGTATCCCGCC 962215 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 ||||||||| || | || ||||| || ||||| | || |||| ||||| | | || Sbjct 962216 AGACCAACAGAGGCTGATCTTTGCTGGTAAACAGCTGGAGGATGGCCGCACACTTGCTGA 962275 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||||||| || || || || || || || || || Sbjct 962276 TTACAATATTCAGAAGGAGTCTACTCTTCACTTGGTTCT 962314 >seq25634 Length=602113 Score = 114 bits (126), Expect = 1e-20 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||||||||| | || || || | ||||| | ||||| ||| || Sbjct 348550 ATGCAGATCTTTGTAAAGACCCTTACTGGCAAGACTATCACCTTGGAAGTTGAGAGTTCA 348609 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||| || || || |||| |||| ||| ||||| || || ||||| || || Sbjct 348610 GACACTATTGA--CAATGTTAAAGCCAAAATTCAA-GACAAGGAGGGTATTCCCCCAGAT 348666 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || ||||| || ||||| | || |||| |||||| | | ||||| Sbjct 348667 CAGCAGAGGTTGATCTTTGCTGGGAAACAGCTCGAGGATGGACGCACTCTTGCTGATTAT 348726 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||||||||| || || || || || ||||| Sbjct 348727 AATATTCAAAAAGAGTCTACACTCCACTTGGTGCT 348761 >seq25319 Length=181645 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| |||||| |||| || ||| | ||||| | ||||| ||| || Sbjct 59721 ATGCAAATATTTGTCAAGACTCTGACTGGGAAAACTATCACTCTTGAAGTTGAGAGCTCA 59780 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || || ||||| |||||| ||||| |||||||||||||| ||||| Sbjct 59781 GATACCATTGACAATGTGAAGGCTAAAATCCAGGACAAGGAAGGGATTCCACCGGACCAG 59840 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||| || || ||||| || |||| || || ||| |||||||| Sbjct 59841 CAAAGGCTGATCTTTGCTGGGAAGCAATTGGAGGATGGCCGAACCCTGGCAGATTACAAC 59900 Query 25179 ATTCAAAAAGAATCCAC 25195 || || || || || || Sbjct 59901 ATCCAGAAGGAGTCTAC 59917 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| |||||| | || || ||| |||| || | || || ||| ||| Sbjct 59493 ATGCAGATATTTGTTAAGACTCTTACTGGGAAAACCATTACCTTGGAGGTTGAGAGCTCT 59552 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || ||||| | |||| ||| |||||||| ||||||||||| || || Sbjct 59553 GACACCATTGATAATGTGAAGGCTAAAATTCAG-GACAAAGAGGGGATTCCACCGGATCA 59611 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | |||||||| || || || | ||||||| | ||| ||| || || || Sbjct 59612 GCAAAGGTTGATTTTTGCAGGAAAGCAGCTTGAAGATGGAAGGACTTTGGCTGACTATAA 59671 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTG 25208 || || || ||||| || || ||||| ||| Sbjct 59672 CATCCAGAAGGAATCAACCCTTCATTTGGTG 59702 >seq25706 Length=1095516 Score = 109 bits (120), Expect = 5e-19 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| ||||| || || |||| || | || || || | Sbjct 699377 ATGCAAATTTTTGTTAAGACCTTGACGGGAAAGACCATTACCTTGGAGGTAGAAAGCAGT 699318 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| |||| | || || | ||| |||||||||||||||||||| || Sbjct 699317 GACACAATCGATAATGTCA---AGGCGAAGATTCAA-GACAAAGAAGGGATTCCACCAGA 699262 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||| || | ||||| || || || || | ||||||| | ||| ||| ||||| Sbjct 699261 TCAGCAGAGGTTGATTTTCGCAGGAAAGCAGCTTGAAGATGGAAGGACTTTGGCTGATTA 699202 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| || ||||| || || || | ||| ||||||| | ||||| Sbjct 699201 TAACATTCAGAAGGAATCAACACTTCACCTTGTGTTAAGGCTTCGTGGAGG 699151 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || ||||| || || |||| || | ||||| ||| Sbjct 699605 ATGCAGATCTTCGTCAAAACCTTGACGGGAAAGACCATTACTCTTGAAGTTGAGAGCAGC 699546 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||||| || |||| | ||||| | ||| ||||||||||| ||||| || || Sbjct 699545 GACACTATTGATAATGTCA---AGGCAAAGATTCAG-GACAAAGAAGGAATTCCCCCAGA 699490 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || || || | || ||||| || ||||| | ||||||| || ||| ||| ||||| Sbjct 699489 TCAGCAAAGGCTAATCTTTGCTGGAAAACAGCTTGAAGATGGGCGTACTTTGGCTGATTA 699430 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || |||||||| || || || | ||||| Sbjct 699429 TAATATCCAGAAAGAATCAACACTTCACCTTGTGCT 699394 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || || | || || | || |||||| Sbjct 699149 ATGCAGATTTTTGTTAAGACTTTGACTGGAAAGACTATTACTTTGGAGGTGGAGAGTAGC 699090 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||| || | ||| | || | ||| || || ||||||||||| ||||| || Sbjct 699089 GATACTATTGATAATGTTAAGGCTAAGATTCAG-GATAAGGAAGGGATTCCTCCTGATCA 699031 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | |||||||| || || ||| | ||||||| | || ||| ||||| || Sbjct 699030 GCAGAGATTGATTTTTGCTGGGAAGCAACTTGAAGATGGAAGGACCTTGGCTGATTATAA 698971 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||| || ||||| || || || || Sbjct 698970 TATCCAGAAAGAGTCTACTCTTCA 698947 >seq25682 Length=819203 Score = 102 bits (112), Expect = 7e-17 Identities = 152/212 (72%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||| | |||||| | ||||| || | ||||| | || | |||| ||| Sbjct 237044 ATGCAGATCTTTATCAAGACTCTCACCGGCAAGACTATCACCTTGGAGGCGGAGAGTTCT 236985 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||| | | | || || |||| || ||||| ||||||| ||||| || ||| Sbjct 236984 GACACTTGACAATATC-GAGGCCAAAATCCAA-GACAAGAAAGGGATCCCACCAGATCAA 236927 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || |||| ||||| || || || | || |||| | |||| | ||||| || ||| Sbjct 236926 CAA-GGCTTATCTTTGCTGGTAAGCAGATTGAGGATGGTAGCACACTTGGCGACTATAAT 236868 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| ||||||||||| || || || ||||| Sbjct 236867 ATTCAGAAAGAATCCACTCTCCACTTGGTGCT 236836 >seq25337 Length=191068 Score = 89.7 bits (98), Expect = 4e-13 Identities = 136/192 (71%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| ||||| || || || | || || || | || || |||| || ||| | Sbjct 88931 ATGCAGATATTCGTGAAAACCCTAACTGGGAAGACAATAACTCTCGAGGTAGAGAGCAGT 88990 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || ||||| || || ||| || ||| ||||||||||| ||||||||||||| Sbjct 88991 GATACCATCGA--CAATGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCACCTGACC 89048 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || || || || || ||| | ||||||| | | ||| ||| ||||||| Sbjct 89049 AGCAGCGCTTGATCTTCGCTGGAAAGCAACTTGAAGATGGTAGAACTTTGGCTGATTACA 89108 Query 25177 ATATTCAAAAAG 25188 |||| || |||| Sbjct 89109 ATATCCAGAAAG 89120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433191940830845