Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq25760 208 8e-49 seq25692 93.3 5e-14 seq25762 91.5 2e-13 seq25753 91.5 2e-13 seq25185 87.8 2e-12 seq25398 86.0 7e-12 seq25759 84.2 2e-11 seq25733 84.2 2e-11 seq25698 82.4 8e-11 >seq25760 Length=3792821 Score = 208 bits (230), Expect = 8e-49 Identities = 408/595 (69%), Gaps = 15/595 (3%) Strand=Plus/Plus Query 93081 TGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGC 93140 |||| || || ||||| || ||| ||||| || || |||||||| || ||||| || Sbjct 707898 TGTAAATCAAACACGCGAAATCGCAGTGTAAGCCCTCATCTCGTGAGATTAACTCGTTTG 707957 Query 93141 TGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTA 93199 ||||| | ||| || | | || || || || ||||||||||| | ||| ||||| Sbjct 707958 AAAATGTCAGACCCGGCATTAACCCACGCTTTTTAAGCCAAAATATCGC-GCAGAAACTT 708016 Query 93200 CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCG 93259 ||||| || || || ||||| || || || || | ||| | || |||||| | | Sbjct 708017 CCAGAGAAGAAAATCCCTTCAACACAAGCGAAAGCAATAATCCTCTCAGCAAAAGATTCC 708076 Query 93260 GAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTT 93319 || | || |||||||| |||||||| || ||||| ||| || ||||| | || Sbjct 708077 GAGC--CGTCT-ATCCATTTCAAAGCCCACTCCGCTTTCTTCGCTATGCAAGGAACCGTC 708133 Query 93320 TCGATAGCGTTAAATA---GGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATT 93376 |||||||||| ||| | ||| | | || | || ||| || || || || | Sbjct 708134 TCGATAGCGTGAAACAAACGGTTCTTT---TCATTGGAGTCTTTGATATAAGTCTCCAAC 708190 Query 93377 AACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACAT 93436 || ||||| ||||||||||| |||| ||||| || || |||||||| ||||||||| Sbjct 708191 AAAAGAGAGTACATTTCAGAGTGGATGTTCTCAATAGCGATTTGGAAACCGTAGAAAGCA 708250 Query 93437 CTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATA 93496 | || || | | || || |||| ||| | | |||| |||||| ||| ||| Sbjct 708251 CGCGCCTCAGCCACTTGAACCTCTTTCATAAAACGGCCGGCGAGGTTTTCAAGGACGATA 708310 Query 93497 CCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTA 93556 || ||||| || || || || || | | || || || || || ||||| | Sbjct 708311 CCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGAGAGATGAAGTGCTTTTCATCGGGAGTT 708370 Query 93557 AGCTTATCCCAAT--CGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACG 93614 || ||||| | |||| |||||| || ||||| ||||| || | |||||||| | Sbjct 708371 AGGGATTCCCAGTGACGGA--GATCTTGAGAGAGATCCACTTCCTCTGCCGTCCAAAATG 708428 Query 93615 ATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATAT 93669 ||||||| |||||||||||||| ||||| || ||| | ||||| ||||| || || Sbjct 708429 ATGCTTCGGCTTTTTTGTACATTTCCCAAATTTCTGGGTATTGGATTGGGAACAT 708483 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/90 (82%), Gaps = 6/90 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 2385907 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 2385964 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATT 126351 ||||||||| || ||||| ||||||| || Sbjct 2385965 CGTGGGTTCAAATCCCACTTCTGACAATTT 2385994 >seq25692 Length=941965 Score = 93.3 bits (102), Expect = 5e-14 Identities = 83/102 (81%), Gaps = 3/102 (3%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 615744 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 615801 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 ||| || |||||| ||| | |||| || ||| ||||||| || Sbjct 615802 TTCAAATCCCACAGCTGTC-AATTGTTTTTGAAATTTTTTTT 615842 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 614974 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 615031 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| || ||| || Sbjct 615032 TTCAAATCCCACAGCTGTCACATTTTT 615058 >seq25762 Length=4693355 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/97 (81%), Gaps = 6/97 (6%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 3471900 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 3471843 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||| || ||||| |||||||| ||| || Sbjct 3471842 GCGTGGGTTCAAATCCCACTTCTGACAAACGATTGTT 3471806 Score = 84.2 bits (92), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 6/86 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 961253 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 961310 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||| || ||||| |||||| Sbjct 961311 CGTGGGTTCAAATCCCACTTCTGACA 961336 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 2793517 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGG 2793460 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 2793459 GCGTGGGTTCAAATCCCACTTCTGACA 2793433 >seq25753 Length=2347473 Score = 91.5 bits (100), Expect = 2e-13 Identities = 80/97 (82%), Gaps = 7/97 (7%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA--- 126320 |||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 2175639 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAG 2175696 Query 126321 -GCGTGGGTTCGAACCCCACACCTGACAAATTATTAT 126356 |||||||||| || ||||| |||||| ||| |||| Sbjct 2175697 GGCGTGGGTTCAAATCCCACTTCTGACATATT-TTAT 2175732 >seq25185 Length=123440 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/104 (80%), Gaps = 8/104 (8%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| |||||||||||||||||||| |||| | ||| |||||| | ||| || | Sbjct 100498 GTCAGGATGGCCGAGTGGTCTAAGGCGTCAGACTCAAGTTCTGGT--CTTCGAGAGAGGG 100441 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTT 126365 ||||||||| || ||||| |||||| |||||||| |||||| Sbjct 100440 CGTGGGTTCAAATCCCACTTCTGACATGTTATTATT--AATTTT 100399 >seq25398 Length=230526 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/86 (83%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCTCGGGAG 126321 |||||||| ||||||||||||||||||||||||| | ||| |||||| || | | | | Sbjct 218812 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTTAGAGGG 218871 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||| || ||||| |||||| Sbjct 218872 CGTGGGTTCAAATCCCACTTCTGACA 218897 >seq25759 Length=3402282 Score = 84.2 bits (92), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 6/86 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 2126572 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 2126629 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||| || ||||| |||||| Sbjct 2126630 CGTGGGTTCAAATCCCACTTCTGACA 2126655 >seq25733 Length=1382611 Score = 84.2 bits (92), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 6/86 (7%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 107676 GTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 107619 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||| || ||||| |||||| Sbjct 107618 CGTGGGTTCAAATCCCACTTCTGACA 107593 Score = 84.2 bits (92), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 6/86 (7%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 117800 GTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 117743 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||| || ||||| |||||| Sbjct 117742 CGTGGGTTCAAATCCCACTTCTGACA 117717 >seq25698 Length=994805 Score = 82.4 bits (90), Expect = 8e-11 Identities = 82/104 (79%), Gaps = 7/104 (7%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || | Sbjct 87946 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGGG 87889 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTT 126365 ||||||||| || ||||| ||||| | ||||| || ||||| Sbjct 87888 CGTGGGTTCAAATCCCACTTCTGAC-ATTTATTTTTTTCATTTT 87846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556681469940120