Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq25716 107 1e-18 seq25319 93.3 3e-14 seq25706 87.8 1e-12 >seq25716 Length=1210045 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | || ||| |||| |||||||| || ||| | || |||| | | Sbjct 962103 ATGCAGATCTTCGTAAAGACACTAACTGGCAAAACTATCACCCTTGAGGTGGAAAGCTCT 962162 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| || || |||||||||||| | || | ||||| Sbjct 962163 GACACCATTGACAATGTCAAGGCTAAGATCCAAGATAAAGAGGGTATCCCGCCAGACCAA 962222 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || ||||||||||| ||||| || || ||| || | || ||||||||| Sbjct 962223 CAGAGGCTGATCTTTGCTGGTAAACAGCTGGAGGATGGCCGCACACTTGCTGATTACAAT 962282 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||| ||||||||||| |||| | || |||| || || Sbjct 962283 ATTCAGAAGGAGTCTACTCTTCACTTGGTTCTTCGACTACGTGGTGG 962329 >seq25319 Length=181645 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || | || ||||| || |||||| ||||| || | | Sbjct 59265 ATGCAAATTTTTGTGAAGACCCTCACTGGCAAGACTATTACCTTGGAAGTTGAGAGCTCG 59324 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || ||||| || ||| || || |||||| | || | ||||| Sbjct 59325 GACACAATTGACAATGTTAAGGCCAAGATTCAGGACAAGGAGGGTATTCCCCCAGACCAA 59384 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| |||||||||||||| || || || |||||| || | || || ||||| Sbjct 59385 CAGAGGCTTATCTTTGCTGGGAAGCAGCTTGAAGATGGTCGCACCCTAGCTGACTACAAC 59444 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||||||||||| || || ||||| |||| Sbjct 59445 ATTCAGAAGGAGTCCACCCTTCACTTGGT 59473 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || | || ||||| || |||||| ||||| || | | Sbjct 59037 ATGCAAATTTTTGTGAAGACCCTCACTGGCAAGACTATTACCTTGGAAGTTGAGAGCTCG 59096 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || ||||| || ||| || || || ||| | || | |||| Sbjct 59097 GACACTATTGACAATGTTAAGGCCAAGATTCAGGACAAGGAAGGTATTCCCCCAGACCAG 59156 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || ||||||||||||||||| || || ||| || | ||||| ||||| Sbjct 59157 CAGAGGCTCATCTTTGCTGGCAAACAGCTGGAGGATGGCCGTACCCTCGCCGACTACAAC 59216 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||| || || ||||| |||| | ||| | |||| || Sbjct 59217 ATTCAGAAGGAGTCCACCCTTCACTTGGTCCTCCGTCTCAGAGGTGG 59263 >seq25706 Length=1095516 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGA-AGCCGC 21892 ||||| || ||| |||| || || || || || || ||||| |||| ||| || || Sbjct 699149 ATGCAGATTTTTGTTAAGACTTTGACTGGAAAGACTATTACTTTGGAGGTGGAGAGTAGC 699090 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || ||||| || ||| ||||| || || | ||| | || Sbjct 699089 -GATACTATTGATAATGTTAAGGCTAAGATTCAGGATAAGGAAGGGATTCCTCCTGATCA 699031 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||||| | || |||||||| || ||||| |||||| || || |||| ||||| || Sbjct 699030 GCAGAGATTGATTTTTGCTGGGAAGCAACTTGAAGATGGAAGGACCTTGGCTGATTATAA 698971 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAA 22067 ||| ||||| || ||||||||||| | || || ||| | || || || | |||| Sbjct 698970 TATCCAGAAAGAGTCTACTCTTCACCTTGTCTTGCGTCTGCGCGGTGGTTTTTAA 698916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358012353625102