Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq25310 118 9e-22 seq25716 104 2e-17 seq25634 98.7 8e-16 seq25319 98.7 8e-16 seq25706 96.9 3e-15 seq25337 86.0 5e-12 >seq25310 Length=177726 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||||||||| | || |||||||| ||||| || ||||| | || | |||||| Sbjct 154727 AACTAAATGAAGAGTTGATTCTTTCTGAATATTATAATCTGCAAGCGTCCTGCCATCTTC 154786 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 |||||||| || ||| |||| ||||||||||| || ||||| |||||||| || || Sbjct 154787 GAGTTGTTTTCCGGCGAAGATCAGACGCTGTTGATCAGGAGGGATGCCTTCCTTATCTTG 154846 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||||| ||||| | |||| ||||||| | ||||| || | || | || || Sbjct 154847 GATCTTGGCTTTTACGTTATCAATTGTGTCGGAGCTCTCGACCTCAAGAGTTATGGTCTT 154906 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||||| || ||||| ||||| || ||||| Sbjct 154907 GCCGGTGAGGGTTTTGACAAAGATTTGCAT 154936 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||||| ||| | || || || || |||||||| ||||| | || | |||||| Sbjct 166324 AACTAGATGAAGGGTCGACTCCTTCTGAATGTTATAATCTGCAAGGGTCCTGCCATCTTC 166383 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 |||||||| || ||| |||| ||||||||||| || ||||| |||||||| ||||| Sbjct 166384 GAGTTGTTTTCCGGCGAAGATCAGACGCTGTTGATCAGGAGGGATGCCTTCCTTGTCTTG 166443 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||||| ||||| | |||| ||||||| | ||||| || | || | || || Sbjct 166444 GATCTTGGCTTTTACGTTATCAATTGTGTCGGAGCTCTCGACCTCAAGAGTTATGGTCTT 166503 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||||| || || || ||||| || ||||| Sbjct 166504 GCCGGTGAGGGTCTTGACAAAGATTTGCAT 166533 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||||||||| || | | || | || | |||||||| ||||| ||||| |||||| Sbjct 166532 ATACCGCCACGGAGACGGAGGACCAGGTGAAGAGTAGATTCCTTTTGGATGTTATAATCG 166591 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| ||||| || || || || ||| |||| | | |||||||| || Sbjct 166592 GCCAAAGTACGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAACCTTTGTTGGTCAGGT 166651 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||||||||| ||||| || | | || | ||| || | | || Sbjct 166652 GGGATCCCTTCTTTGTCTTGGATCTTGGCCTTCACATTATCGATGGTATCAGAGCTCTCC 166711 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||||| ||||| | |||||| ||||| |||||||| Sbjct 166712 ACCTCCAGAGTAATTGTTTTCCCGGTTAAAGTTTTGACAAAGATCTGCAT 166761 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||||||||| || | | ||||| || | ||||| || || || ||||| |||||| Sbjct 154935 ATACCGCCACGGAGACGGAGAACTAGGTGAAGAGTAGACTCCTTCTGGATGTTATAATCG 154994 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| ||||| ||||| || || ||| |||| | | |||||||| || Sbjct 154995 GCCAAAGTACGGCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAACCTTTGTTGGTCAGGT 155054 Query 114273 GGAATGCCTTCTTT 114286 ||||| |||||||| Sbjct 155055 GGAATTCCTTCTTT 155068 >seq25716 Length=1210045 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||||| | ||| || || | ||||| || || ||||| |||||||| Sbjct 962332 ATGCCACCACGTAGTCGAAGAACCAAGTGAAGAGTAGACTCCTTCTGAATATTGTAATCA 962273 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||| || || ||||||||||| |||| || | ||||||||| || Sbjct 962272 GCAAGTGTGCGGCCATCCTCCAGCTGTTTACCAGCAAAGATCAGCCTCTGTTGGTCTGGC 962213 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || ||||| || ||||| || | | |||| |||||| | | ||| Sbjct 962212 GGGATACCCTCTTTATCTTGGATCTTAGCCTTGACATTGTCAATGGTGTCAGAGCTTTCC 962153 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | |||||||| || || || ||||| || |||||||| Sbjct 962152 ACCTCAAGGGTGATAGTTTTGCCAGTTAGTGTCTTTACGAAGATCTGCAT 962103 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || ||||| | ||||| ||||||||||| || || || Sbjct 962560 ATGCCACCACGGAGGCGGAGCACCAAATGAAGGGTAGACTCTTTTTGAATATTATAGTCA 962501 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| ||| || || || || |||||| | || || | ||| || || || Sbjct 962500 GCAAGTGTACGACCATCCTCTAGCTGCTTGCCAGCGAATATCAGCCTCTGCTGATCAGGT 962441 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| |||||| || | | |||| |||||| | || Sbjct 962440 GGAATACCTTCTTTGTCCTGAATCTTAGCCTTGACATTGTCAATGGTGTCTGAACTCTCA 962381 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| || | || ||||| || || ||||| ||||| || |||||| Sbjct 962380 ACCTCCAGTGTAATTGTCTTGCCAGTGAGGGTTTTCACAAAGATTTGCATG 962330 >seq25634 Length=602113 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||||||||| |||| | || || || | ||||| ||||||||||| || ||||| Sbjct 348779 ATACCGCCACGAAGTCGGAGCACCAAGTGGAGTGTAGACTCTTTTTGAATATTATAATCA 348720 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || ||| || || ||||| ||||| |||| | | ||| || || || Sbjct 348719 GCAAGAGTGCGTCCATCCTCGAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGATCTGGG 348660 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 ||||| || || ||||| ||| ||| | |||| | | |||| ||||| | || Sbjct 348659 GGAATACCCTCCTTGTCTTGAAT-TTTGGCTTTAACATTGTCAATAGTGTCTGAACTCTC 348601 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || ||||| || || || |||||||| |||||||| Sbjct 348600 AACTTCCAAGGTGATAGTCTTGCCAGTAAGGGTCTTTACAAAGATCTGCAT 348550 >seq25319 Length=181645 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC- 114211 ||||| ||||| || | | || || || | || || || || ||||||||||| || Sbjct 59494 ATACCACCACGGAGCCGGAGCACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCA 59435 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 ||| | || ||| ||||||||| || || ||||| |||| || | ||||||||| || Sbjct 59434 GCT-AGGGTGCGACCATCTTCAAGCTGCTTCCCAGCAAAGATAAGCCTCTGTTGGTCTGG 59376 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 ||||| || || ||||| |||||| || | | |||| ||||| | | || Sbjct 59375 GGGAATACCCTCCTTGTCCTGAATCTTGGCCTTAACATTGTCAATTGTGTCCGAGCTCTC 59316 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || ||||| || || || || |||||||| ||||| Sbjct 59315 AACTTCCAAGGTAATAGTCTTGCCAGTGAGGGTCTTCACAAAAATTTGCAT 59265 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || ||||||||||| ||| | ||||| ||| || || ||||| ||| Sbjct 59233 GTGGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTACGGCCATCCTCCAGCTGTTTGCCA 59174 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || ||||| ||||| ||||| |||||| || Sbjct 59173 GCAAAGATGAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGAATCTTGGCCTTA 59114 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||| | | || || |||| ||| | || ||||| || || || Sbjct 59113 ACATTGTCAATAGTGTCCGAGCTCTCAACTTCCAAGGTAATAGTCTTGCCAGTGAGGGTC 59054 Query 114366 TTTACAAAAATCTGCAT 114382 || |||||||| ||||| Sbjct 59053 TTCACAAAAATTTGCAT 59037 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| || || | || || || ||||||||||| || || | ||| ||| |||||| Sbjct 58790 AACCAAGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGCAAGAGTGCGACCATCTTC 58731 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 || ||||| ||||| |||| | | ||||| || ||||| || || || ||||| Sbjct 58730 GAGCTGTTTTCCAGCAAAGATCAACCTTTGTTGATCTGGAGGGATCCCCTCCTTGTCTTG 58671 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 |||||| ||| | | || | |||||| | | ||| || || | ||| | || || Sbjct 58670 GATCTTTGCTTTCACATTGTCGATGGTGTCTGAGCTTTCCACCTCAAGGGTGATGGTCTT 58611 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| || || ||||| ||||| || ||||| Sbjct 58610 GCCAGTGAGGGTTTTAACAAAGATTTGCAT 58581 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || ||||||||||| || | ||||| ||| || || ||||| ||| Sbjct 59005 GTGGACTCCTTCTGAATGTTGTAGTCCGCGAGGGTACGGCCATCCTCCAGCTGTTTGCCA 58946 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || || || || || ||||| ||||| ||| Sbjct 58945 GCAAAGATGAGCCTCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGTATCTTGGCTTTA 58886 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||| | | || || || | ||| | || ||||| || ||||| Sbjct 58885 ACATTGTCAATTGTGTCTGAGCTCTCAACCTCTAAGGTAATAGTCTTGCCAGTGAGAGTC 58826 Query 114366 TTTACAAAAATCTGCAT 114382 || |||||||||||||| Sbjct 58825 TTCACAAAAATCTGCAT 58809 >seq25706 Length=1095516 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | || |||||||| || || || ||||| Sbjct 699376 ATACCTCCACGGAGACGAAGCACAAGGTGAAGTGTTGATTCTTTCTGGATATTATAATCA 699435 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| ||||||||| ||||| ||||| |||| || | || || || || Sbjct 699436 GCCAAAGTACGCCCATCTTCAAGCTGTTTTCCAGCAAAGATTAGCCTTTGCTGATCTGGG 699495 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| ||||||| || | | |||| |||||| || || Sbjct 699496 GGAATTCCTTCTTTGTCCTGAATCTTTGCCTTGACATTATCAATAGTGTCGCTGCTCTCA 699555 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | || | || || || |||| ||||| || || ||||||||| Sbjct 699556 ACTTCAAGAGTAATGGTCTTTCCCGTCAAGGTTTTGACGAAGATCTGCATG 699606 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||||||||||||||| |||||| | || || ||||| || ||||| || Sbjct 699637 GTTGATTCTTTTTGAATGTTATAATCGGCTAAGGTGCGGCCGTCTTCGAGCTGTTTTCCT 699696 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||||||||| || ||||| || || || ||||| ||||| || || ||| Sbjct 699697 GCGAAGATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTGGCTTTC 699756 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| || || || |||| || | || || || || || ||| Sbjct 699757 ACGTTGTCTATTGTGTCGCTGCTCTCCACCTCCAGAGTGATGGTCTTTCCTGTGAGGGTT 699816 Query 114366 TTTACAAAAATCTGCAT 114382 || || ||||||||||| Sbjct 699817 TTCACGAAAATCTGCAT 699833 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || || || || | || | || ||||| || |||||||| ||||| Sbjct 699148 ATCCCTCCACGAAGCCTTAACACAAGGTGAAGTGTTGATTCCTTCTGAATGTTATAATCA 699207 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||| | ||||||||| || || || ||| | || | | ||| || || || Sbjct 699208 GCCAAAGTCCTTCCATCTTCAAGCTGCTTTCCTGCGAAAATCAACCTCTGCTGATCTGGT 699267 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| |||||| || | | || | ||||| || ||| Sbjct 699268 GGAATCCCTTCTTTGTCTTGAATCTTCGCCTTGACATTATCGATTGTGTCACTGCTTTCT 699327 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || || || |||| || || |||||||| ||||| Sbjct 699328 ACCTCCAAGGTAATGGTCTTTCCCGTCAAGGTCTTAACAAAAATTTGCAT 699377 >seq25337 Length=191068 Score = 86.0 bits (94), Expect = 5e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 114193 CTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGA 114252 |||| || || |||||||| || ||| | | |||||||||||| || |||||| ||| Sbjct 89120 CTTTCTGGATATTGTAATCAGCCAAAGTTCTACCATCTTCAAGTTGCTTTCCAGCGAAGA 89061 Query 114253 TGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTT 114312 | | ||||| ||||| || ||||||||||||||||| ||||| || | | | Sbjct 89060 TCAAGCGCTGCTGGTCAGGTGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTGT 89001 Query 114313 CAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 114372 | | ||| || || || || || | || | || || || || || ||||| || | Sbjct 89000 CGATGGTATCACTGCTCTCTACCTCGAGAGTTATTGTCTTCCCAGTTAGGGTTTTCACGA 88941 Query 114373 AAATCTGCAT 114382 | |||||||| Sbjct 88940 ATATCTGCAT 88931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420002483443956