Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_009236.1 Length=36690 Score E Sequences producing significant alignments: (Bits) Value seq11655 282 1e-71 >seq11655 Length=1055 Score = 282 bits (312), Expect = 1e-71 Identities = 672/992 (68%), Gaps = 49/992 (5%) Strand=Plus/Plus Query 11576 CGTCTTGTGCTCGCCGACCGCATGGCCGTCGATGTTCTTGCTGATGTACTTCGCGACGTA 11635 |||| |||| |||| ||||| || |||||||||||||| |||||||||||||||||| Sbjct 13 CGTCATGTGATCGCT-ACCGCGTGCCCGTCGATGTTCTTCGCGATGTACTTCGCGACGTA 71 Query 11636 ACCGACCGCCGAGCCTTTCGCCCGGTCGATCATCTCGAAGCGCACACGATGG--CGCTGC 11693 || ||||||||||| ||| |||||||| || || || || || | |||||| Sbjct 72 GCCCACCGCCGAGCCGCGCGCACGGTCGATGATTTCAAACTTCATGCGCCGTTCCGCTGC 131 Query 11694 GCACCTGGCTCGTCGCCGGAATCGCGCAGGCCGTGCTTGCGCATGACGGAGCAGAAT-CG 11752 || | | |||| | ||||| ||| |||| | ||||| ||| ||| || | Sbjct 132 GCCCTT--CTCGCCCGGCGAATCCTGCAAACCGTATTCACGCATCACGCGGCAAAACGCC 189 Query 11753 TTCG-ATCTTGTCGGCAAATACCAAGCCGTGCCAATGAGGCGTACCGTCGTGATTTGGCT 11811 | | ||| | ||| ||| |||| |||||||| || || ||| ||||||| | || | Sbjct 190 TGCACATCGT-TCGAGAAA-ACCAGCCCGTGCCAGTGCGGTGTAGCGTCGTGGTGCGGTT 247 Query 11812 CGGCAACGCGCATCCCGAAATAGACGATGCCTTCGCGCTTCAGCTCGGCACGAGTCCGTT 11871 | || || || || ||||| || | ||| ||| |||| ||| ||| || | | Sbjct 248 CCGCCACTCGGATTCCGAAGTAATGCACGCCGAGCCGCGCGAGCTTGGCGCGAATCAGCT 307 Query 11872 GCCATACCTTGCGCAAATAT-GCT-TGCGCCGCGCGCGGATCGACATCGTCATAGCGCGG 11929 ||| || ||||||| ||| ||| |||| | |||| || || || | || | Sbjct 308 TCCACACGTTGCGCAGGTATAGCTGTGCGTCACGCGGCGA-CGCGCCCG-CGTATTTCTT 365 Query 11930 GTTCGGGCGAACCCAACTGTCCGTCGTCG--------TG----ACCGCGTGAAATCGGCT 11977 ||||||| || | || ||| ||| || || || ||||| || Sbjct 366 GTTCGGGATAAAGCGCATGGCCGATTTCGGCCCCACCTGCCGCACGGCATGAAAGCGTGA 425 Query 11978 CGGGCAGGTCAATGTGAACATGACGCCCCGAAACTTCGCGTCGTCGGCAAGCTCTTCAAG 12037 |||||| || | |||||||| |||||| |||||| || |||| || || |||||| Sbjct 426 CGGGCACGTGAGCGTGAACATCACGCCCTCAAACTTGGCCGCGTCCGCGAGGTCTTCACA 485 Query 12038 CCCGCGCAGACGCGTGAACAGCTCGCCGCGCTTCATCGCCTTGTTTGATATGCCTTTTGC 12097 || ||||| ||||| | || |||||||| | ||||||||||| ||||| || || Sbjct 486 GCCACGCAGGCGCGTCATCAATTCGCCGCGGCGAAGCGCCTTGTTTGCGATGCCCTTCGC 545 Query 12098 CGCCAGTTCAGCGAGCGTGAATTGCTGGCCGACCTCGTTCTCCATCGTCACGGATTCGAG 12157 ||||||| ||||||||||| |||| ||| |||||||||||||| ||| |||||||| Sbjct 546 GGCCAGTTGCGCGAGCGTGAAGCGCTGCCCGTCCTCGTTCTCCATCACCACCGATTCGAG 605 Query 12158 CGT-GCGCGCATTGCGCCGATTCTGTGCAACGCGACGACGCACGGCGTCATCACTCGCAT 12216 ||| ||| ||||||||| || || || | ||| || ||| ||||| | || || | Sbjct 606 CGTCGCG-GCATTGCGCGCGTTTTGCGCGATGCGCCGCTTCACCGCGTCTTTGCTGGCGT 664 Query 12217 ACGGTTC-TGCGCGACGATGCACGTAATGTAAGCGGATATTGCTAAATTCGAGCGCACGA 12275 |||| || ||| | | || ||||| || | ||| || || | ||| ||||| ||| Sbjct 665 ACGGGTCTTGCTTGTAG-TGGACGTAGTGCAGGCGAATGTTCGAATGTTCCAGCGCGCGA 723 Query 12276 ATATGCATCTTGCGCAGTTGTCGCCGCCACCATAGCTCGCAGCGCACGCGTGCGACACGC 12335 || ||| | ||||| || || |||||||| || ||||| |||||| || || Sbjct 724 ATGTGCTTGCGGCGCAACTGCCGACGCCACCACAGTTCGCACTTCACGCGCGCCACGTTG 783 Query 12336 TCGGCCGGATGCTCGAAATTGGGTA-GGTCGACGCCATACATCGCGCACGCATTCTCCGC 12394 || |||| || |||| || | |||| |||||||| |||||| | | | ||| Sbjct 784 TCCGCCGCGTGTGCGAATCGCGGCATGGTC-ACGCCATAGGCCGCGCAGG---TTTGCGC 839 Query 12395 G---ACAATGTGCGCGTCG--AGTATCGA----CAGCCCGTGCGACCGCAGCGAGACATC 12445 | || || | ||| || |||| |||| || || || || ||||| Sbjct 840 GCATACGATCACGGAATCGGCCGTCTCGAGTCCCAGCACGCGCAACTGC------ACATC 893 Query 12446 GTTTGCGATTCGACGGGCTTTCAGACAGATTTCGAAATCGTTGGCGTCCGGCCGGACAGG 12505 ||| ||||| ||||||||||| ||||||| ||||| || || ||||| || || Sbjct 894 GTTCGCGATCTTCCGGGCTTTCAGCACGATTTCGTAATCGGACGCATCGGGCCGCACCGG 953 Query 12506 GAAACTGTCGGGGGCGTGCTCGTCGAGAAACT 12537 | | || || || ||||| | |||||||| Sbjct 954 CAGGTTATCCGGCGCATGCTCTTTGAGAAACT 985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117250517911912