Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq25310 86.0 5e-12 >seq25310 Length=177726 Score = 86.0 bits (94), Expect = 5e-12 Identities = 90/115 (78%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 |||||||||| ||| || || |||||||| || ||||||||||||||| ||||||| | Sbjct 166307 CCTCCTCTCAACCGAAGAACTAGATGAAGGGTCGACTCCTTCTGAATGTTATAATCTG-C 166365 Query 33961 AATTGTC--GCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || ||| || | || || | ||| || ||||| || ||||| ||||| ||||| Sbjct 166366 AAGGGTCCTGC-CATCTTCGAGTTGTTTTCCGGCGAAGATCAGACGCTGTTGATC 166419 Score = 84.2 bits (92), Expect = 2e-11 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || || ||||| ||||| || ||| ||| |||||||| |||||||| || || || || Sbjct 165860 AGACGGAGCACAAGATGGAGTGTGGACTCTTTCTGAATATTGTAATCAGC-AAGCGTACG 165918 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | || ||||| ||||| || ||||||||||| | ||||||||| Sbjct 165919 CCCATCCTCCAACTGCTTCCCTGCAAATATCAGCCTCTGCTGATC 165963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396937727741926