Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq25679 100 3e-16 seq25762 87.8 2e-12 >seq25679 Length=787315 Score = 100 bits (110), Expect = 3e-16 Identities = 196/287 (68%), Gaps = 12/287 (4%) Strand=Plus/Plus Query 10790 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 10849 ||||| || ||||| | | | ||| ||| || ||||| | || || || || Sbjct 166660 TCAAACCGCCCTGGCCTCAACAAGGCAGAGTCCAGAATATCTGCTCTATTAGTTGCTGCA 166719 Query 10850 ATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 10906 || |||| ||| || || |||| ||||| |||||||| || ||||| || || || Sbjct 166720 ATAACAATGATACCAGT---GTTACCCTCAAAACCATCCATTTCTGTCAATAGCTGGTTA 166776 Query 10907 ATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCA---CCCGCACTGCGTTGCTTACCG 10963 | || ||||| | ||||||||| | | |||| || | | | |||| | || Sbjct 166777 AGTGTCTGTTCTCTTTCATCATTTCC---CCCACCAATGCCGGTGCCTCTTTGCCTTCCA 166833 Query 10964 ACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAG 11023 || || ||||||||||| | || || ||||| ||| |||||| ||| || ||| Sbjct 166834 ACAGCATCAATTTCATCCACAAATACAATACAAGGTGCATTTTCTTTGGCCTTTTTGAAG 166893 Query 11024 ATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAA 11070 | ||| |||||||| |||||| ||||| |||||||| || ||||| Sbjct 166894 AGATCACGGACTCTAGAGGCACCAACACCAACAAACATCTCAACAAA 166940 >seq25762 Length=4693355 Score = 87.8 bits (96), Expect = 2e-12 Identities = 188/280 (67%), Gaps = 6/280 (2%) Strand=Plus/Minus Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGG 10935 |||||||||||| |||||||| | || || ||||| ||||| | ||||||||| | Sbjct 4006680 AAAGCCATCCATTTCAGTCAACAACTGGTTAATGGTCTGTTCTCTTTCATCATTTCCACC 4006621 Query 10936 CATACCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGAT 10992 |||| || || | | ||| | || || || ||||||||||| || || || || Sbjct 4006620 ---ACCAAGGCCTGCTCCTCTCTGCCTTCCAACAGCATCAATTTCATCAATAAACACAAT 4006564 Query 10993 ACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACC 11052 || || ||| | ||| || || | ||||| |||||| || || ||||| Sbjct 4006563 GCAAGGAGCCTTTGCTTTGGCTTTATCGAACAAATCTCTCACTCTCGAAGCCCCAACACC 4006504 Query 11053 CACAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACC 11112 |||||||| || ||||| | | || | |||| || || ||||| | ||| || Sbjct 4006503 CACAAACAACTCAACAAACTCAGATGCTGCACATGAGAAAAATGGGACTCCTGCTTCTCC 4006444 Query 11113 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGT 11152 || | |||| || | || |||||||| || |||||| Sbjct 4006443 AGCAACTGCTCTAGCTAACAGTGTCTTCCCTGTACCAGGT 4006404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597161229740040