Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq25716 100 3e-16 seq25634 96.9 4e-15 seq25310 96.9 4e-15 seq25319 84.2 2e-11 >seq25716 Length=1210045 Score = 100 bits (110), Expect = 3e-16 Identities = 153/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| ||||| ||| ||||| || |||||||| ||||| || || || | || || Sbjct 962768 CACCAAGTGCAAAGTGGATTCCTTCTGGATATTGTAGTCAGCAAGGGTGCGGCCATCCTC 962709 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 ||||||||||| || || || || | ||||||||| | ||| | | ||||||||| | Sbjct 962708 CAGCTGCTTACCCGCAAAGATCAGCCTCTGCTGGTCTGGTGGTATCCCTTCCTTGTCC-T 962650 Query 42119 GATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 42174 || | || | |||| | | | || || |||| || || || | ||||| | Sbjct 962649 GAATCTTGGCCTTGACATTGTCTATGGTATCCGAGCTC---TCAACCTCCAGGGTGATTG 962593 Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | ||||| || || || ||||||||||||||||| Sbjct 962592 TCTTGCCAGTGAGGGTTTTTACAAAGATTTGCAT 962559 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||||||||||||||| || || || || ||| | || ||||||||||||||||| || Sbjct 962977 TCCTTTTGAATATTGTAGTCCGCAAGGGTGCGCCCATCCTCTAGCTGCTTACCAGCAAAA 962918 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || || | ||||||||| | ||| | | || |||||| ||| || |||| | Sbjct 962917 ATCAGCCTCTGCTGGTCAGGTGGGATACCTTCTTTGTCCTGGATCTTAGCCTTGACATTG 962858 Query 42138 GCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194 | | ||||| |||| || || || | ||||| || || || || || || || Sbjct 962857 TCAATAGTGTCAGAGCTC---TCAACCTCCAGGGTGATTGTCTTACCAGTGAGAGTTTTC 962801 Query 42195 ACAAAGATTTGCAT 42208 |||||||||||||| Sbjct 962800 ACAAAGATTTGCAT 962787 Score = 96.9 bits (106), Expect = 4e-15 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||||||||||||||| || || || | || || ||||| |||||||| || Sbjct 962294 CTCCTTCTGAATATTGTAATCAGCAAGTGTGCGGCCATCCTCCAGCTGTTTACCAGCAAA 962235 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || | ||| ||||| | || | | ||| || || ||| || |||| | Sbjct 962234 GATCAGCCTCTGTTGGTCTGGCGGGATACCCTCTTTATCTTGGATCTTAGCCTTGACATT 962175 Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | ||||| ||| |||||| || | ||||| |||||||| ||||| ||||| Sbjct 962174 GTCAATGGTGTCAGAGCT---TTCCACCTCAAGGGTGATAGTTTTGCCAGTTAGTGTCTT 962118 Query 42194 TACAAAGATTTGCAT 42208 ||| ||||| ||||| Sbjct 962117 TACGAAGATCTGCAT 962103 Score = 91.5 bits (100), Expect = 2e-13 Identities = 151/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||||||| | || ||| ||||||||||| || ||||| || || || | || || Sbjct 962540 CACCAAATGAAGGGTAGACTCTTTTTGAATATTATAGTCAGCAAGTGTACGACCATCCTC 962481 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 ||||||||| ||||||||||| || | |||||| || | ||| | | || |||||| | Sbjct 962480 TAGCTGCTTGCCAGCGAATATCAGCCTCTGCTGATCAGGTGGAATACCTTCTTTGTCC-T 962422 Query 42119 GATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 42174 || | || | |||| | | | ||||| ||| || || || | || || | Sbjct 962421 GAATCTTAGCCTTGACATTGTCAATGGTGTCTGAACTC---TCAACCTCCAGTGTAATTG 962365 Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | ||||| || || || || |||||||||||||| Sbjct 962364 TCTTGCCAGTGAGGGTTTTCACAAAGATTTGCAT 962331 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || |||||||||||||| || |||| | | || || |||||||| ||||| || Sbjct 963205 TCCTTCTGGATATTGTAATCAGCAAGGGTCCTCCCATCCTCAAGCTGCTTCCCAGCAAAA 963146 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 || | | |||||| || | ||| | || ||||||| | ||| |||||| || | | Sbjct 963145 ATCAACCTCTGCTGATCTGGTGGGATGCCTTCCTTGT-CTTGAATTTTTGCCTTCACATT 963087 Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | || || || ||| ||||| || | || || || || || || || ||||| Sbjct 963086 GTCAACAGTATCTGAACTC---TCCACCTCCAAGGTTATAGTCTTCCCTGTAAGGGTCTT 963030 Query 42194 TACAAAGATTTGCAT 42208 |||||||| ||||| Sbjct 963029 CACAAAGATCTGCAT 963015 >seq25634 Length=602113 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| || | ||| ||| ||||||||||| |||||||| ||||| || | || || Sbjct 348759 CACCAAGTGGAGTGTAGACTCTTTTTGAATATTATAATCAGCAAGAGTGCGTCCATCCTC 348700 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 ||||| || ||||| || || | | |||||| || | || | | |||||||| | | Sbjct 348699 GAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGATCTGGGGGAATACCCTCCTTGT-CTT 348641 Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 42174 || |||| | || | | | | | | ||||| ||| || || || | ||||| | Sbjct 348640 GAATTTTGGCTTTAACATTGTCAATAGTGTCTGAACTC---TCAACTTCCAAGGTGATAG 348584 Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | ||||| || || |||||||||||||| ||||| Sbjct 348583 TCTTGCCAGTAAGGGTCTTTACAAAGATCTGCAT 348550 >seq25310 Length=177726 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| || || | |||| ||| | || ||| ||||| || || |||||||| Sbjct 154482 CCCCCTCTCAATCGGAGAACCAGATGAAGGGTTGACTCTTTTTGGATGTTATAATCAGCA 154541 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || |||| | || || |||||||| || ||||| || || | |||||| || | || Sbjct 154542 AGCGTCCTTCCATCCTCGAGCTGCTTTCCGGCGAAGATTAGCCTCTGCTGATCAGGCGGG 154601 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 42158 | | ||||| || ||| || |||| | | | |||||| |||| ||| Sbjct 154602 ATACCTTCCTTATCTTGGATCTTGGCCTTGACGTTATCGATCGTGTCAGAGCTC---TCC 154658 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||| || ||||| |||||||| || ||||| |||||||||||||| Sbjct 154659 ACCTCGAGAGTTATGGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 154708 Score = 89.7 bits (98), Expect = 6e-13 Identities = 154/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||| | ||| | |||| ||| || ||||||||||||||||| || || ||| | Sbjct 165862 ACGGAGCACAAGATGGAGTGTGGACTCTTTCTGAATATTGTAATCAGCAAGCGTACGCCC 165921 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || | |||||| || || ||||| || | |||||| || | ||| | | |||||| Sbjct 165922 ATCCTCCAACTGCTTCCCTGCAAATATCAGCCTCTGCTGATCAGGTGGAATCCCCTCCTT 165981 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCG 42168 | | ||| |||||| ||| | | | | ||||| |||| ||||| || | | Sbjct 165982 AT-CTTGAATTTTTGCTTTCACGTTATCAATTGTGTCCGAGCTC---TCCACTTCCAGTG 166037 Query 42169 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | ||||| || || || | ||||| || || || ||||| Sbjct 166038 TTATGGTCTTCCCTGTCAATGTCTTCACGAATATCTGCAT 166077 >seq25319 Length=181645 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/231 (68%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | || | ||||| || | || |||||||||||| || || ||||| Sbjct 58808 ACCACCTCTGAGGCGAAGAACCAAGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGC 58749 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || || ||||| || ||||| || || | | || || || | || Sbjct 58748 AAGAGTGCGACCATCTTCGAGCTGTTTTCCAGCAAAGATCAACCTTTGTTGATCTGGAGG 58689 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTC 42157 | | ||||||||| ||| ||| ||| | | | | ||||| ||| ||| Sbjct 58688 GATCCCCTCCTTGTCTTGGATCTTTGCTTTCACATTGTCGATGGTGTCTGAGCT---TTC 58632 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || | |||||||| ||||| || || || || |||||||||||||| Sbjct 58631 CACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTAACAAAGATTTGCAT 58581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543037865107920