Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_010945.1 Length=39136 Score E Sequences producing significant alignments: (Bits) Value seq13672 136 1e-27 >seq13672 Length=1125 Score = 136 bits (150), Expect = 1e-27 Identities = 235/339 (69%), Gaps = 2/339 (1%) Strand=Plus/Minus Query 2083 ACTTCTCCGATAATTCGGAAATCCGTCTCTGGTGTGATTGGCATATCCTTATACGCAGGG 2142 |||||||||||||| |||||||| | ||| || | ||||| | |||| | Sbjct 728 ACTTCTCCGATAATACGGAAATCACTATCTCTATCTATGAGTATATCGTCATACTTGTCG 669 Query 2143 TTCAAGCTATGTAAGTAAGCTTGGTCTTTATCAATAACAAGCTGCTTGATATAAGCATCG 2202 |||| ||||| | | ||| | | |||||||| || |||||||||||||| Sbjct 668 TTCAGACTATGCAGAAATGCTCCAGAATCGTTTATAACAAGTTGTTTGATATAAGCATCA 609 Query 2203 TTATTATAATTAAAAACTCCGATAACCCCATCATTTAACTCAACACTT-GTCTGAATGAA 2261 | ||| | ||||||||| ||| | ||||| | | || | | || ||| | || Sbjct 608 CCGTAATACTCAAAAACTCCTATATCACCATCTGACAGGTTAATAGATAGTTTGA-TAAA 550 Query 2262 TACCAGGTCGCCATCGTGATAGTCTGGCTCCATAGAGTCCCCTTTGATTGGGATAACAAA 2321 ||| ||| ||| || || || || |||||||| || || | | || || ||||| Sbjct 549 TACATAGTCCCCAGAATGGTATTCGGGTTCCATAGAATCGCCATAAACCGGTATGACAAA 490 Query 2322 GTCAGCATCGATATTTACTGGTAACTCAATCCGTTCAACTCGTACATCGTTCAAATACTG 2381 ||||| ||| || |||||||| ||||| ||| ||| ||||||| || | |||||| Sbjct 489 ATCAGCGTCGTAATCGACTGGTAATTCAATTGTTTCTACTTGTACATCATTTAGATACTG 430 Query 2382 CCCTGTACCTGCAGAAGCTGGGTGGTCGTAGTAGTCGTA 2420 |||||||| || ||||||| |||||||||||| | ||| Sbjct 429 ACCTGTACCAGCTGAAGCTGCGTGGTCGTAGTAATTGTA 391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 125075323292588