Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq25573 127 2e-24 seq25744 98.7 1e-15 seq25310 98.7 1e-15 seq25716 95.1 1e-14 seq25319 89.7 5e-13 seq25706 87.8 2e-12 >seq25573 Length=429841 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| ||||| || | || | || | | |||| |||||||| |||||||||||| Sbjct 359400 GCCGCCACGCAAGCGGAGCACAAGGTGGAGGGTTGATTCCTTTTGGATGTTGTAGTCGGC 359459 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || |||||| || || || |||| |||||| ||| ||||||||||| || Sbjct 359460 GAGCGTGCGGCCGTCCTCAAGCTGCTTTCCGGCGAAGATTAAACGTTGTTGGTCCGGGGG 359519 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||||||| ||||| |||||| || | |||| || | ||||| | ||||| | Sbjct 359520 TATACCTTCCTTGTCTTGGATTTTGGCCTTCACATTG-TCGATTGTGTCTGATGACTCTA 359578 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | ||||| || || || ||||| ||||| |||||||| Sbjct 359579 CCTCTAGGGTTATTGTTTTCCCCGTTAGGGTTTTCACAAAGATCTGCAT 359627 >seq25744 Length=1702523 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| |||| || | ||| | | |||||||| || ||||||||||| Sbjct 948294 CCTCCTCTCAATCGCAGCACCAGATGCAAAGTAGACTCCTTCTGGATGTTGTAGTCCGCA 948235 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||| |||||||| || || | ||||||| || || |||||||| || Sbjct 948234 AGTGTACGGCCGTCTTCGAGTTGCTTTCCTGCGAAGATTAGCCGTTGCTGGTCCGGTGGG 948175 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || || | |||| || | ||| |||| || || || Sbjct 948174 ATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTG-TCGATGGTATCGGAGGATTCAAC 948116 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || ||||| || || ||||| || || |||||||| Sbjct 948115 CTCTAGGGTTATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 948068 >seq25310 Length=177726 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| || | ||||| ||| | | | |||||||| |||||||| || || Sbjct 166307 CCTCCTCTCAACCGAAGAACTAGATGAAGGGTCGACTCCTTCTGAATGTTATAATCTGCA 166366 Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || | || | || ||||||||||| |||| |||| ||||||||||| || ||||| Sbjct 166367 AGGGTCCTGCCA-TCTTCGAGTTGTTTTCCGGCGAAGATCAGACGCTGTTGATCAGGAGG 166425 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || ||||| | || | ||||||| ||| || Sbjct 166426 GATGCCTTCCTTGTCTTGGATCTTGGCTTTTACGTTATCAATTGTGTCGGAGCTCTCGAC 166485 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || || || || || || ||||| || ||||| Sbjct 166486 CTCAAGAGTTATGGTCTTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 166533 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || | ||| || | ||||||||| | |||| || || ||||| || || || Sbjct 154709 GCCTCCCCTCAATCGGAGAACTAAATGAAGAGTTGATTCTTTCTGAATATTATAATCTGC 154768 Query 138447 CATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 | || | || | || ||||||||||| |||| |||| ||||||||||| || |||| Sbjct 154769 AAGCGTCCTGCCA-TCTTCGAGTTGTTTTCCGGCGAAGATCAGACGCTGTTGATCAGGAG 154827 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 | || ||||| || || ||| || ||||| | || | ||||||| ||| | Sbjct 154828 GGATGCCTTCCTTATCTTGGATCTTGGCTTTTACGTTATCAATTGTGTCGGAGCTCTCGA 154887 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || || || || ||||| ||||| || ||||| Sbjct 154888 CCTCAAGAGTTATGGTCTTGCCGGTGAGGGTTTTGACAAAGATTTGCAT 154936 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | ||||| || | | |||||||| || ||||| || ||| | Sbjct 154938 CCGCCACGGAGACGGAGAACTAGGTGAAGAGTAGACTCCTTCTGGATGTTATAATCGGCC 154997 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||| |||||||| || |||| |||| | | |||||||| || || Sbjct 154998 AAAGTACGGCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAACCTTTGTTGGTCAGGTGGA 155057 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || |||||||| | ||| || || | | || | ||| || | ||||||| Sbjct 155058 ATTCCTTCTTTACCTTGGATCTTGGCCTTGACATTATCGATGGTATCAGAACTCTCCACC 155117 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | |||||||| || | ||||| || || |||||||| Sbjct 155118 TCGAGAGTAATAGTTTTACCGGTTAAGGTTTTGACGAAGATCTGCAT 155164 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||| ||||| || ||| || |||||| ||| ||||| || || |||| Sbjct 166568 GATTCCTTTTGGATGTTATAATCGGCCAAAGTACGGCCGTCTTCGAGCTGCTTTCCGGCG 166627 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | | |||||||| || || || ||||||||||| ||| || || | Sbjct 166628 AAGATCAACCTTTGTTGGTCAGGTGGGATCCCTTCTTTGTCTTGGATCTTGGCCTTCACA 166687 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||| || | ||||||||| | || | ||||| || || | |||||| Sbjct 166688 TTATCGATGGTATCAGAGCTCTCCACCTCCAGAGTAATTGTTTTCCCGGTTAAAGTTTTG 166747 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 166748 ACAAAGATCTGCAT 166761 >seq25716 Length=1210045 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | || | ||| | | |||| ||||||||||| |||||||| Sbjct 963014 GCCACCACGGAGACGGAGCACCAGATGAAGGGTTGATTCCTTTTGAATATTGTAGTCCGC 962955 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || ||| ||||| || || ||||| | | | || || | ||| ||||| || || Sbjct 962954 AAGGGTGCGCCCATCCTCTAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCAGGTGG 962895 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||||||||| ||| || || | |||| || | ||||| | ||| | Sbjct 962894 GATACCTTCTTTGTCCTGGATCTTAGCCTTGACATTG-TCAATAGTGTCAGAGCTCTCAA 962836 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || |||||||| |||||||| ||||| || ||||| Sbjct 962835 CCTCCAGGGTGATTGTCTTACCAGTGAGAGTTTTCACAAAGATTTGCAT 962787 >seq25319 Length=181645 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 138405 AACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTC 138464 ||| || || | | ||||||||||||||||||| ||||| | ||| || || || Sbjct 58790 AACCAAGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGCAAGAGTGCGACCATCTTC 58731 Query 138465 GAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGT 138524 ||| ||||| || | | |||| | | ||||| || ||||| || || || ||||| Sbjct 58730 GAGCTGTTTTCCAGCAAAGATCAACCTTTGTTGATCTGGAGGGATCCCCTCCTTGTCTTG 58671 Query 138525 GATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTT 138583 ||| ||| ||| | |||| || | |||||| | |||||||| | || | || | Sbjct 58670 GATCTTTGCTTTCACATTG-TCGATGGTGTCTGAGCTTTCCACCTCAAGGGTGATGGTCT 58612 Query 138584 TACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | ||||| || ||||| ||||| || ||||| Sbjct 58611 TGCCAGTGAGGGTTTTAACAAAGATTTGCAT 58581 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| | ||| | || || || | | | |||||||| |||||||||||||| Sbjct 59035 CCACCTCTAAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGCG 58976 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||| || ||||| || | | |||| || | ||| ||||| || || Sbjct 58975 AGGGTACGGCCATCCTCCAGCTGTTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 58916 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA--ATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| || | || | |||| |||| || | ||||| | ||| | Sbjct 58915 ATTCCCTCCTTGTC-CTGTATCTTGGCTTTAACATTG-TCAATTGTGTCTGAGCTCTCAA 58858 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || ||||| ||||| || |||||||||||||| Sbjct 58857 CCTCTAAGGTAATAGTCTTGCCAGTGAGAGTCTTCACAAAAATCTGCAT 58809 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| | ||| | || || || | | | |||||||| ||||||||||||||| Sbjct 59263 CCACCTCTGAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCG 59204 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||| || ||||| || | | |||| || | ||| ||||| || || Sbjct 59203 AGGGTACGGCCATCCTCCAGCTGTTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGA 59144 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA--ATTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| ||||| ||| | || | ||| |||| || | ||||| | ||| | Sbjct 59143 ATACCTTCCTTGTC-CTGAATCTTGGCCTTAACATTG-TCAATAGTGTCCGAGCTCTCAA 59086 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | || | || || ||||| || || || |||||||| ||||| Sbjct 59085 CTTCCAAGGTAATAGTCTTGCCAGTGAGGGTCTTCACAAAAATTTGCAT 59037 >seq25706 Length=1095516 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||| || ||||||||||| || ||| | || || ||| ||||| ||||| || | Sbjct 699638 TTGATTCTTTTTGAATGTTATAATCGGCTAAGGTGCGGCCGTCTTCGAGCTGTTTTCCTG 699697 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| ||||| || ||||| || || || ||||| ||||| |||||| ||| | Sbjct 699698 CGAAGATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTGGCTTTCA 699757 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | |||||| | ||||||||| | || | || || || || || |||| Sbjct 699758 CGTTGTCTATTGTGTCGCTGCTCTCCACCTCCAGAGTGATGGTCTTTCCTGTGAGGGTTT 699817 Query 138599 TTACAAAAATCTGCAT 138614 | || ||||||||||| Sbjct 699818 TCACGAAAATCTGCAT 699833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496102584897360